Index

A

acceleration (proteus.mbd.CouplingFSI.ProtChBody attribute) acceleration_last (proteus.mbd.CouplingFSI.ProtChBody attribute) accumulateSubgridMassHistory() (proteus.SubgridError.AdvectionDiffusionReactionHaukeSangalliInterpolantWithTransientSubScales_ASGS method) (proteus.SubgridError.AdvectionDiffusionReactionTransientSubscales_ASGS method) (proteus.SubgridError.NavierStokesTransientSubScalesASGS_velocity_pressure method) (proteus.SubgridError.SGE_base method) adams_vel (proteus.mbd.CouplingFSI.ProtChBody attribute) adaptMesh (in module proteus.default_n) adaptMesh_nSteps (in module proteus.default_n) adaptMesh_numIter (in module proteus.default_n) addBoundaryFluxesBackToResidual() (proteus.PostProcessingTools.VelocityPostProcessingAlgorithmBase method) (proteus.PostProcessingTools.VelocityPostProcessor_Original method) AddedMassNewton (class in proteus.NonlinearSolvers) addLineGaugePoints() (proteus.Gauges.Gauges method) addModel() (proteus.TwoPhaseFlow.TwoPhaseFlowProblem.SystemPhysics method) addOption() (proteus.defaults.Numerics_base method) (proteus.defaults.Physics_base method) (proteus.TwoPhaseFlow.utils.Parameters.FreezableClass method) addPrismaticLinksWithSpring() (proteus.mbd.CouplingFSI.ProtChBody method) addPrismaticLinkX() (proteus.mbd.CouplingFSI.ProtChBody method) addProtChBody() (proteus.mbd.CouplingFSI.ProtChSystem method) addProtChMesh() (proteus.mbd.CouplingFSI.ProtChSystem method) addSpring() (proteus.mbd.CouplingFSI.ProtChBody method) addSubcomponent() (proteus.mbd.CouplingFSI.ProtChSystem method) AddTimestep() (in module proteus.mprans.ArchiveBeams) addTriangleMeshFromShape() (proteus.mbd.CouplingFSI.ProtChBody method) ADH_metfile (class in proteus.InputTranslators) adj() (in module proteus.EGeometry) Advection_ASGS (class in proteus.SubgridError) Advection_Diagonal_average (class in proteus.NumericalFlux) Advection_DiagonalUpwind (class in proteus.NumericalFlux) Advection_DiagonalUpwind_Diffusion_IIPG (class in proteus.NumericalFlux) Advection_DiagonalUpwind_Diffusion_IIPG_exterior (class in proteus.NumericalFlux) Advection_DiagonalUpwind_Diffusion_LDG (class in proteus.NumericalFlux) Advection_DiagonalUpwind_Diffusion_NIPG (class in proteus.NumericalFlux) Advection_DiagonalUpwind_Diffusion_NIPG_exterior (class in proteus.NumericalFlux) Advection_DiagonalUpwind_Diffusion_SIPG (class in proteus.NumericalFlux) Advection_DiagonalUpwind_Diffusion_SIPG_exterior (class in proteus.NumericalFlux) Advection_DiagonalUpwind_exterior (class in proteus.NumericalFlux) Advection_DiagonalUpwind_IIPG_exterior (class in proteus.NumericalFlux) AdvectionDiffusionReaction_ASGS (class in proteus.SubgridError) AdvectionDiffusionReactionHaukeSangalliInterpolant_ASGS (class in proteus.SubgridError) AdvectionDiffusionReactionHaukeSangalliInterpolantWithTransientSubScales_ASGS (class in proteus.SubgridError) AdvectionDiffusionReactionTransientSubscales_ASGS (class in proteus.SubgridError) AdvectionLag_ASGS (class in proteus.SubgridError) advectiveFluxBoundaryConditions (in module proteus.default_p) advectiveFluxOfX() (proteus.AnalyticalSolutions.AS_base method) (proteus.AnalyticalSolutions.LinearADR_Sine method) advectiveFluxOfXT() (proteus.AnalyticalSolutions.LinearAD_DiracIC method) AffineMaps (class in proteus.FemTools) AggregateVelocityPostProcessor (class in proteus.PostProcessingTools) ai (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) Aij (proteus.mbd.CouplingFSI.ProtChBody attribute) Aij_factor (proteus.mbd.CouplingFSI.ProtChBody attribute) Aij_transform_local (proteus.mbd.CouplingFSI.ProtChBody attribute) Aij_updated_global (proteus.mbd.CouplingFSI.ProtChBody attribute) allGather() (proteus.Archiver.AR_base method) allGatherIncremental() (proteus.Archiver.AR_base method) allocate() (proteus.LinearSolvers.StorageSet method) (proteus.Transport.StorageSet method) allocateDummyCoefficients() (proteus.TransportCoefficients.TC_base method) allocateGeometricInfo_edge() (in module proteus.cmeshTools) allocateGeometricInfo_hexahedron() (in module proteus.cmeshTools) allocateGeometricInfo_NURBS() (in module proteus.cmeshTools) allocateGeometricInfo_quadrilateral() (in module proteus.cmeshTools) allocateGeometricInfo_tetrahedron() (in module proteus.cmeshTools) allocateGeometricInfo_triangle() (in module proteus.cmeshTools) allocateModels() (proteus.NumericalSolution.NS_base method) allocateNodeAndElementNodeDataStructures() (in module proteus.cmeshTools) allowed_time_units (proteus.InputTranslators.ADH_metfile attribute) analyticalSolution (in module proteus.default_p) ang_acceleration (proteus.mbd.CouplingFSI.ProtChBody attribute) ang_acceleration_last (proteus.mbd.CouplingFSI.ProtChBody attribute) ang_vel_norm (proteus.mbd.CouplingFSI.ProtChBody attribute) ang_vel_norm_last (proteus.mbd.CouplingFSI.ProtChBody attribute) ang_velocity (proteus.mbd.CouplingFSI.ProtChBody attribute) ang_velocity_last (proteus.mbd.CouplingFSI.ProtChBody attribute) appendMeshEnsight() (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method) apply() (proteus.LinearAlgebraTools.InvOperatorShell method) (proteus.LinearAlgebraTools.LSCInv_shell method) (proteus.LinearAlgebraTools.MatrixInvShell method) (proteus.LinearAlgebraTools.SpInv_shell method) (proteus.LinearAlgebraTools.TwoPhase_PCDInv_shell method) (proteus.LinearSolvers.ChebyshevSemiIteration method) (proteus.LinearSolvers.LinearSolver method) apply_ns() (proteus.LinearSolvers.ConstantNullSpace method) (proteus.LinearSolvers.NavierStokesConstantPressure method) (proteus.LinearSolvers.SolverNullSpace method) apply_to_schur_block() (proteus.LinearSolvers.NavierStokesConstantPressure static method) (proteus.LinearSolvers.SolverNullSpace static method) applyAddedMass (proteus.mbd.CouplingFSI.ProtChBody attribute) applyCockburnDGlimiterP1Lagrange2d() (proteus.TimeIntegration.DGlimiterP1Lagrange2d method) (proteus.TimeIntegration.DGlimiterP2Lagrange2d method) (proteus.TimeIntegration.DGlimiterPkMonomial2d method) applyDGlimitingP1Lagrange1d() (proteus.TimeIntegration.DGlimiterP1Lagrange1d method) (proteus.TimeIntegration.DGlimiterP2Lagrange1d method) (proteus.TimeIntegration.DGlimiterPkMonomial1d method) applyDGlimitingP1Lagrange1d_withVacuumTol() (proteus.TimeIntegration.DGlimiterP1Lagrange1d_Sw method) (proteus.TimeIntegration.DGlimiterP2Lagrange1d_Sw method) (proteus.TimeIntegration.DGlimiterPkMonomial1d_Sw method) applyDurlofskyDGlimiterP1Lagrange2d() (proteus.TimeIntegration.DGlimiterDurlofskyP1Lagrange2d method) applyDurlofskyDGlimiterP1Lagrange2d_withVacuumTol() (proteus.TimeIntegration.DGlimiterDurlofskyP1Lagrange2d_Sw method) applyDurlofskyDGlimiterP1Lagrange3d() (proteus.TimeIntegration.DGlimiterDurlofskyP1Lagrange3d method) applySlopeLimiting() (proteus.TimeIntegration.DGlimiterDurlofskyP1Lagrange2d method) (proteus.TimeIntegration.DGlimiterDurlofskyP1Lagrange2d_Sw method) (proteus.TimeIntegration.DGlimiterDurlofskyP1Lagrange3d method) (proteus.TimeIntegration.DGlimiterP1Lagrange1d method) (proteus.TimeIntegration.DGlimiterP1Lagrange1d_Sw method) (proteus.TimeIntegration.DGlimiterP1Lagrange2d method) (proteus.TimeIntegration.DGlimiterP2Lagrange1d method) (proteus.TimeIntegration.DGlimiterP2Lagrange1d_Sw method) (proteus.TimeIntegration.DGlimiterP2Lagrange2d method) (proteus.TimeIntegration.DGlimiterPkMonomial1d method) (proteus.TimeIntegration.DGlimiterPkMonomial1d_Sw method) (proteus.TimeIntegration.DGlimiterPkMonomial2d method) ar (proteus.mprans.BoundaryConditions.RelaxationZoneWaveGenerator attribute) AR_base (class in proteus.Archiver) Archive_parallel() (in module proteus.mprans.ArchiveBeams) Archive_time_step() (in module proteus.mprans.ArchiveBeams) archiveAnalyticalSolutions() (proteus.Transport.OneLevelTransport method) archiveElementBoundaryQuadratureValues() (proteus.Transport.OneLevelTransport method)

archiveElementQuadratureValues() (proteus.Transport.OneLevelTransport method)

archiveExteriorElementBoundaryQuadratureValues() (proteus.Transport.OneLevelTransport method) archiveFiniteElementResiduals() (proteus.Transport.OneLevelTransport method) archiveFiniteElementSolutions() (proteus.Transport.OneLevelTransport method) ArchiveFlags (class in proteus.Archiver) archiveInitialSolution() (proteus.NumericalSolution.NS_base method) archiveSolution() (proteus.NumericalSolution.NS_base method) archiveVelocityValues() (proteus.PostProcessingTools.AggregateVelocityPostProcessor method) (proteus.PostProcessingTools.VelocityPostProcessingAlgorithmBase method) (proteus.PostProcessingTools.VPP_POINT_EVAL_GWVD method) Argmax() (proteus.ObjectiveFunctions.OsherFunc method) (proteus.ObjectiveFunctions.OsherFuncCoef method) Argmin() (proteus.ObjectiveFunctions.OsherFunc method) (proteus.ObjectiveFunctions.OsherFuncCoef method) AS_base (class in proteus.AnalyticalSolutions) assembleAuxiliaryVariables() (in module proteus.mprans.SpatialTools) assembleDomain() (in module proteus.mprans.SpatialTools) (in module proteus.SpatialTools) assembleSpinUpSystem() (proteus.mprans.CLSVOF.LevelModel method) assert_boundaryConditions() (proteus.SWFlow.SWFlowProblem.SWFlowProblem method) (proteus.TwoPhaseFlow.TwoPhaseFlowProblem.TwoPhaseFlowProblem method) assert_initialConditions() (proteus.SWFlow.SWFlowProblem.SWFlowProblem method) (proteus.TwoPhaseFlow.TwoPhaseFlowProblem.TwoPhaseFlowProblem method) atol_res (in module proteus.default_n) atol_u (in module proteus.default_n) attachAuxiliaryVariables() (proteus.AuxiliaryVariables.AV_base method) (proteus.mbd.CouplingFSI.ProtChAddedMass method) (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.mbd.CouplingFSI.ProtChSystem method) (proteus.mprans.BoundaryConditions.kWall method) (proteus.mprans.BoundaryConditions.RelaxationZoneWaveGenerator method) (proteus.mprans.BoundaryConditions.WallFunctions method) attachBackNodeToBody() (proteus.mbd.CouplingFSI.ProtChMoorings method) attachFrontNodeToBody() (proteus.mbd.CouplingFSI.ProtChMoorings method) attachInvScaledMassOperator() (proteus.LinearSolvers.OperatorConstructor method) attachLaplaceOperator() (proteus.LinearSolvers.OperatorConstructor method) (proteus.Transport.OneLevelTransport method) attachLineGauges() (proteus.mprans.SpatialTools.ShapeRANS method) attachLineIntegralGauges() (proteus.mprans.SpatialTools.ShapeRANS method) attachMassOperator() (proteus.LinearSolvers.OperatorConstructor method) attachModel() (proteus.AuxiliaryVariables.AV_base method) (proteus.AuxiliaryVariables.BoundaryForce method) (proteus.AuxiliaryVariables.BoundaryPressure method) (proteus.AuxiliaryVariables.ConservationHistoryLS method) (proteus.AuxiliaryVariables.ConservationHistoryMC method) (proteus.AuxiliaryVariables.MassOverRegion method) (proteus.AuxiliaryVariables.PressureProfile method) (proteus.AuxiliaryVariables.PT123velocityGenerator method) (proteus.AuxiliaryVariables.RecirculationLength method) (proteus.AuxiliaryVariables.VelocityAverage method) (proteus.AuxiliaryVariables.VelocityNormOverRegion method) (proteus.Gauges.Gauges method) (proteus.mbd.CouplingFSI.ProtChAddedMass method) (proteus.mbd.CouplingFSI.ProtChSystem method) (proteus.mprans.BodyDynamics.RigidBody method) (proteus.mprans.BoundaryConditions.kWall method) (proteus.mprans.BoundaryConditions.RelaxationZoneWaveGenerator method) (proteus.mprans.BoundaryConditions.WallFunctions method) attachModels() (proteus.elastoplastic.ElastoPlastic.Coefficients method) (proteus.mprans.AddedMass.Coefficients method) (proteus.mprans.CLSVOF.Coefficients method) (proteus.mprans.Dissipation.Coefficients method) (proteus.mprans.GN_SW2DCV.Coefficients method) (proteus.mprans.Kappa.Coefficients method) (proteus.mprans.MCorr.Coefficients method) (proteus.mprans.MCorr3P.Coefficients method) (proteus.mprans.MoveMesh.Coefficients method) (proteus.mprans.MoveMeshMonitor.Coefficients method) (proteus.mprans.NCLS.Coefficients method) (proteus.mprans.NCLS3P.Coefficients method) (proteus.mprans.Pres.Coefficients method) (proteus.mprans.PresInc.Coefficients method) (proteus.mprans.PresInit.Coefficients method) (proteus.mprans.RANS2P.Coefficients method) (proteus.mprans.RANS2P_IB.Coefficients method) (proteus.mprans.RANS3PF.Coefficients method) (proteus.mprans.RANS3PSed.Coefficients method) (proteus.mprans.RDLS.Coefficients method) (proteus.mprans.SW2D.Coefficients method) (proteus.mprans.SW2DCV.Coefficients method) (proteus.mprans.VOF.Coefficients method) (proteus.mprans.VOF3P.Coefficients method) (proteus.mprans.VOS3P.Coefficients method) (proteus.SubsurfaceTransportCoefficients.GroundwaterTransportCoefficients method) (proteus.SubsurfaceTransportCoefficients.IncompressibleFractionalFlowSaturationMualemVanGenuchtenSplitAdvDiff method) (proteus.SubsurfaceTransportCoefficients.MultiphaseGroundwaterTransportCoefficients method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_pp_pressure_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_pp_saturation_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_pressure_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_saturation_base method) (proteus.Transport.MultilevelTransport method) (proteus.TransportCoefficients.CLevelSetCoefficients method) (proteus.TransportCoefficients.ConstantVelocityLevelSet method) (proteus.TransportCoefficients.DiscreteTwoPhaseAdvectionOperator method) (proteus.TransportCoefficients.GroundwaterBiodegradation01Coefficients method) (proteus.TransportCoefficients.GroundwaterBryantDawsonIonExCoefficients method) (proteus.TransportCoefficients.GroundwaterTransportCoefficients method) (proteus.TransportCoefficients.kEpsilon method) (proteus.TransportCoefficients.kEpsilon_epsilon method) (proteus.TransportCoefficients.kEpsilon_k method) (proteus.TransportCoefficients.LevelSetConservation method) (proteus.TransportCoefficients.LevelSetCurvatureCoefficients method) (proteus.TransportCoefficients.LevelSetNormalCoefficients method) (proteus.TransportCoefficients.MovingMesh method) (proteus.TransportCoefficients.NCLevelSetCoefficients method) (proteus.TransportCoefficients.RedistanceLevelSet method) (proteus.TransportCoefficients.ReynoldsAveragedNavierStokes_kEpsilon method) (proteus.TransportCoefficients.Stokes method) (proteus.TransportCoefficients.TC_base method) (proteus.TransportCoefficients.ThreephaseNavierStokes_ST_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_ST_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_VOF_SO method) (proteus.TransportCoefficients.TwophaseStokes_LS_SO method) (proteus.TransportCoefficients.TwophaseStokes_VOF_SO method) (proteus.TransportCoefficients.VOFCoefficients method) (proteus.TransportCoefficients.VolumeAveragedVOFCoefficients method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcy_split_pressure method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcy_split_saturation method) (proteus.TwoPhaseFlow.TwoPhaseFlowProblem.SystemPhysics method) attachPointGauges() (proteus.mprans.SpatialTools.ShapeRANS method) attachScaledMassOperator() (proteus.LinearSolvers.OperatorConstructor method) attachShape() (proteus.mbd.CouplingFSI.ProtChBody method) attachTPAdvectionOperator() (proteus.LinearSolvers.OperatorConstructor method) AV_base (class in proteus.AuxiliaryVariables)

B

back_body (proteus.mbd.CouplingFSI.ProtChMoorings attribute) BackwardEuler (class in proteus.TimeIntegration) BackwardEuler_cfl (class in proteus.TimeIntegration) bandFactor (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) barrier() (proteus.Comm.Comm method) barycenter0 (proteus.mbd.CouplingFSI.ProtChBody attribute) basisFunctions() (proteus.mprans.beamFEM.FEMTools method) BC_Base (class in proteus.BoundaryConditions) BC_RANS (class in proteus.mprans.BoundaryConditions) BC_type (proteus.BoundaryConditions.BC_Base attribute) BCB_to_VGM_Simple() (in module proteus.TransportCoefficients) BCContainer (class in proteus.SpatialTools) bcsTimeDependent (in module proteus.default_n) beam_type (proteus.mbd.CouplingFSI.ProtChMoorings attribute) beamStep() (proteus.mprans.RANS2P_IB.LevelModel method) beginSequential() (proteus.Comm.Comm method) BernsteinOnCube (class in proteus.FemTools) BernsteinOnSimplex (class in proteus.FemTools) BlockedDofOrderType (class in proteus.LinearSolvers) BlockHeterogeneousCoefficients (class in proteus.SubsurfaceTransportCoefficients) body_back (proteus.mbd.CouplingFSI.ProtChMoorings attribute) body_front (proteus.mbd.CouplingFSI.ProtChMoorings attribute) BoundaryCondition (class in proteus.BoundaryConditions) boundaryCreatesNullSpace (in module proteus.default_p) boundaryFlags (proteus.mbd.CouplingFSI.ProtChBody attribute) BoundaryForce (class in proteus.AuxiliaryVariables) BoundaryPressure (class in proteus.AuxiliaryVariables) Buckley_Leverett_RiemannSoln (class in proteus.AnalyticalSolutions) BuckleyLeverett (class in proteus.ObjectiveFunctions) BuckleyLeverettLiuExample (class in proteus.TransportCoefficients) build_kdtree (proteus.mbd.CouplingFSI.ProtChSystem attribute) buildArrayLists() (proteus.MeshTools.MultilevelMesh method) buildArraysFromLists() (proteus.MeshTools.Mesh method) buildBDM2rhs() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) buildBoundaryMaps() (proteus.MeshTools.HexahedralMesh method) (proteus.MeshTools.TetrahedralMesh method) buildEdgeArray() (proteus.MeshTools.Mesh3DM method) buildEdgeArrays() (proteus.MeshTools.Mesh2DM method) buildFromC() (proteus.MeshTools.Mesh method) (proteus.MeshTools.MultilevelMesh method) buildFromCNoArrays() (proteus.MeshTools.Mesh method)

buildFromSets() (proteus.MeshTools.QuadrilateralMesh method) (proteus.MeshTools.TriangularMesh method) buildGaugeComm() (proteus.Gauges.Gauges method) buildLevelSetMesh() (proteus.MeshTools.TriangularMesh method) buildLineIntegralGaugeOperators() (proteus.Gauges.Gauges method) buildLists() (proteus.MeshTools.EdgeMesh method) (proteus.MeshTools.HexahedralMesh method) (proteus.MeshTools.QuadrilateralMesh method) (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method) buildListsEdges() (proteus.MeshTools.EdgeMesh method) (proteus.MeshTools.HexahedralMesh method) (proteus.MeshTools.QuadrilateralMesh method) (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method) buildListsElems() (proteus.MeshTools.HexahedralMesh method) buildListsFaces() (proteus.MeshTools.HexahedralMesh method) buildListsNodes() (proteus.MeshTools.EdgeMesh method) (proteus.MeshTools.HexahedralMesh method) (proteus.MeshTools.QuadrilateralMesh method) (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method) buildListsQuadrilaterals() (proteus.MeshTools.QuadrilateralMesh method) buildListsTetrahedra() (proteus.MeshTools.TetrahedralMesh method) buildListsTriangles() (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method) buildLocalBDM1projectionMatrices() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_DG_BDM method) (proteus.PostProcessingTools.VPP_PWL_BDM method) (proteus.PostProcessingTools.VPP_PWL_BDM_OPT method) buildLocalBDM2projectionMatrices() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) buildMatlabMeshDataStructures() (proteus.MeshTools.Mesh method) buildNodeDiameterArray() (proteus.MeshTools.QuadrilateralMesh method) buildNodes() (proteus.mbd.CouplingFSI.ProtChMoorings method) buildNodeStarArrays() (proteus.MeshTools.Mesh method) buildPointGaugeOperators() (proteus.Gauges.Gauges method) buildQuantityRow() (proteus.Gauges.Gauges method) buildReferenceSimplex() (in module proteus.MeshTools) buildTriangleArrays() (proteus.MeshTools.Mesh3DM method) buildUnion() (in module proteus.Quadrature) burgersDiagonalVelEvaluate() (proteus.TransportCoefficients.ViscousBurgersEqn method) burgersDiagonalVelHJEvaluate() (proteus.TransportCoefficients.ViscousBurgersEqn method)

C

c (proteus.WaveTools.SolitaryWave attribute) C0_AffineBernsteinOnCube (class in proteus.FemTools) C0_AffineBernsteinOnSimplex (class in proteus.FemTools) C0_AffineLagrangeOnCubeWithNodalBasis (class in proteus.FemTools) C0_AffineLinearOnCubeWithNodalBasis (class in proteus.FemTools) C0_AffineLinearOnSimplexWithNodalBasis (class in proteus.FemTools) C0_AffineP1BubbleOnSimplexWithNodalBasis (class in proteus.FemTools) C0_AffineP1P0BubbleOnSimplexWithNodalBasis (class in proteus.FemTools) C0_AffineQuadraticOnCubeWithNodalBasis (in module proteus.FemTools) C0_AffineQuadraticOnSimplexWithNodalBasis (class in proteus.FemTools) C0_BernsteinOnCube (class in proteus.FemTools) C0_LagrangeOnCubeWithNodalBasis (class in proteus.FemTools) C0_LinearOnCubeWithNodalBasis (class in proteus.FemTools) CaissonBody (class in proteus.mprans.BodyDynamics) calculate() (proteus.AuxiliaryVariables.AV_base method) (proteus.AuxiliaryVariables.BoundaryForce method) (proteus.AuxiliaryVariables.BoundaryPressure method) (proteus.AuxiliaryVariables.ConservationHistoryLS method) (proteus.AuxiliaryVariables.ConservationHistoryMC method) (proteus.AuxiliaryVariables.GatherDOF method) (proteus.AuxiliaryVariables.MassOverRegion method) (proteus.AuxiliaryVariables.PressureProfile method) (proteus.AuxiliaryVariables.PT123velocityGenerator method) (proteus.AuxiliaryVariables.RecirculationLength method) (proteus.AuxiliaryVariables.VelocityAverage method) (proteus.AuxiliaryVariables.VelocityNormOverRegion method) (proteus.ErrorEstimators.HierarchicalMeshEstimator method) (proteus.Gauges.Gauges method) (proteus.mbd.CouplingFSI.ProtChAddedMass method) (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.mbd.CouplingFSI.ProtChSystem method) (proteus.mprans.BodyDynamics.RigidBody method) (proteus.mprans.BoundaryConditions.kWall method) (proteus.mprans.BoundaryConditions.RelaxationZoneWaveGenerator method) (proteus.mprans.BoundaryConditions.WallFunctions method) calculate_area() (in module proteus.mprans.MoveMeshMonitor) calculate_areas() (in module proteus.mprans.MoveMeshMonitor) calculate_deim_indices() (in module proteus.deim_utils) calculate_init() (proteus.AuxiliaryVariables.AV_base method) (proteus.mbd.CouplingFSI.ProtChAddedMass method) (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.mbd.CouplingFSI.ProtChMoorings method) (proteus.mbd.CouplingFSI.ProtChSystem method) (proteus.mprans.BodyDynamics.CaissonBody method) (proteus.mprans.BodyDynamics.PaddleBody method) (proteus.mprans.BodyDynamics.RigidBody method) (proteus.mprans.BoundaryConditions.kWall method) (proteus.mprans.BoundaryConditions.RelaxationZone method) (proteus.mprans.BoundaryConditions.RelaxationZoneWaveGenerator method) (proteus.mprans.BoundaryConditions.WallFunctions method) calculate_phi_python() (proteus.mprans.BoundaryConditions.RelaxationZone method) calculate_vel_python() (proteus.mprans.BoundaryConditions.RelaxationZone method) calculateAuxiliaryQuantitiesAfterStep() (proteus.ADR.LevelModel method) (proteus.elastoplastic.ElastoPlastic.LevelModel method) (proteus.mprans.AddedMass.LevelModel method) (proteus.mprans.CLSVOF.LevelModel method) (proteus.mprans.Dissipation.LevelModel method) (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.Kappa.LevelModel method) (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) (proteus.mprans.MoveMesh.LevelModel method) (proteus.mprans.NCLS.LevelModel method) (proteus.mprans.NCLS3P.LevelModel method) (proteus.mprans.Pres.LevelModel method) (proteus.mprans.PresInc.LevelModel method) (proteus.mprans.PresInit.LevelModel method) (proteus.mprans.RANS2P.LevelModel method) (proteus.mprans.RANS2P_IB.LevelModel method) (proteus.mprans.RANS3PF.LevelModel method) (proteus.mprans.RANS3PSed.LevelModel method) (proteus.mprans.RDLS.LevelModel method) (proteus.mprans.SW2D.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) (proteus.mprans.VOF.LevelModel method) (proteus.mprans.VOF3P.LevelModel method) (proteus.mprans.VOS3P.LevelModel method) (proteus.richards.Richards.LevelModel method) (proteus.Transport.MultilevelTransport method) (proteus.Transport.OneLevelTransport method) calculateCoefficients() (proteus.ADR.LevelModel method) (proteus.mprans.AddedMass.LevelModel method) (proteus.mprans.CLSVOF.LevelModel method) (proteus.mprans.Dissipation.LevelModel method) (proteus.mprans.Kappa.LevelModel method) (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) (proteus.mprans.NCLS.LevelModel method) (proteus.mprans.NCLS3P.LevelModel method) (proteus.mprans.Pres.LevelModel method) (proteus.mprans.PresInc.LevelModel method) (proteus.mprans.PresInit.LevelModel method) (proteus.mprans.RDLS.LevelModel method) (proteus.mprans.VOF.LevelModel method) (proteus.mprans.VOF3P.LevelModel method) (proteus.mprans.VOS3P.LevelModel method) (proteus.richards.Richards.LevelModel method) (proteus.Transport.OneLevelTransport method) calculateCoefs() (proteus.TimeIntegration.BackwardEuler method) (proteus.TimeIntegration.CentralDifference_2ndD method) (proteus.TimeIntegration.FLCBDF method) (proteus.TimeIntegration.TI_base method) (proteus.TimeIntegration.VBDF method) calculateConservationResidual() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) calculateDiffusionSplittings() (proteus.NumericalFlux.Diffusion_LDG method) calculateEddyViscosity_Smagorinsky2P_2D() (proteus.TransportCoefficients.TwophaseReynoldsAveragedNavierStokes_AlgebraicClosure method) calculateEddyViscosity_Smagorinsky2P_3D() (proteus.TransportCoefficients.TwophaseReynoldsAveragedNavierStokes_AlgebraicClosure method) calculateEddyViscosity_Smagorinsky_2D() (proteus.TransportCoefficients.TwophaseReynoldsAveragedNavierStokes_AlgebraicClosure method) calculateEddyViscosity_Smagorinsky_3D() (proteus.TransportCoefficients.TwophaseReynoldsAveragedNavierStokes_AlgebraicClosure method) calculateEigenvalues() (proteus.LinearSolvers.LinearSolver method) (proteus.LinearSolvers.LU method) calculateElementBoundaryCoefficients() (proteus.TimeIntegration.ExplicitRK_base method) (proteus.TimeIntegration.ForwardEuler method) (proteus.TimeIntegration.ForwardEuler_A method) (proteus.TimeIntegration.ForwardEuler_H method) (proteus.TimeIntegration.OuterTheta method) (proteus.TimeIntegration.TI_base method) (proteus.Transport.OneLevelTransport method) calculateElementBoundaryJacobian() (proteus.Transport.OneLevelTransport method) calculateElementBoundaryQuadrature() (proteus.ADR.LevelModel method) (proteus.elastoplastic.ElastoPlastic.LevelModel method) (proteus.mprans.AddedMass.LevelModel method) (proteus.mprans.CLSVOF.LevelModel method) (proteus.mprans.Dissipation.LevelModel method) (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.Kappa.LevelModel method) (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) (proteus.mprans.MoveMesh.LevelModel method) (proteus.mprans.NCLS.LevelModel method) (proteus.mprans.NCLS3P.LevelModel method) (proteus.mprans.Pres.LevelModel method) (proteus.mprans.PresInc.LevelModel method) (proteus.mprans.PresInit.LevelModel method) (proteus.mprans.RANS2P.LevelModel method) (proteus.mprans.RANS3PF.LevelModel method) (proteus.mprans.RANS3PSed.LevelModel method) (proteus.mprans.RDLS.LevelModel method) (proteus.mprans.SW2D.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) (proteus.mprans.VOF.LevelModel method) (proteus.mprans.VOF3P.LevelModel method) (proteus.mprans.VOS3P.LevelModel method) (proteus.richards.Richards.LevelModel method) (proteus.Transport.OneLevelTransport method) calculateElementCoefficients() (proteus.SubsurfaceTransportCoefficients.RE_NCP1_OneLevelTransport method) (proteus.TimeIntegration.BackwardEuler method) (proteus.TimeIntegration.CentralDifference_2ndD method) (proteus.TimeIntegration.ExplicitRK_base method) (proteus.TimeIntegration.FLCBDF method) (proteus.TimeIntegration.FLCBDF_TwophaseDarcy_fc method) (proteus.TimeIntegration.ForwardEuler method) (proteus.TimeIntegration.ForwardEuler_A method) (proteus.TimeIntegration.ForwardEuler_H method) (proteus.TimeIntegration.OuterTheta method) (proteus.TimeIntegration.PsiTCtte method) (proteus.TimeIntegration.PsiTCtte_new method) (proteus.TimeIntegration.TI_base method) (proteus.TimeIntegration.VBDF method) (proteus.Transport.OneLevelTransport method) calculateElementCoefficientsNoDtInMass() (proteus.TimeIntegration.ExplicitRK_base method) calculateElementJacobian() (proteus.SubsurfaceTransportCoefficients.RE_NCP1_OneLevelTransport method) (proteus.Transport.OneLevelTransport method) calculateElementLoad_inhomogeneous() (proteus.Transport.OneLevelTransport method) calculateElementLoadCoefficients_inhomogeneous() (proteus.Transport.OneLevelTransport method) calculateElementMassJacobian() (proteus.Transport.OneLevelTransport method) calculateElementParents() (proteus.MeshTools.MultilevelMesh method) calculateElementQuadrature() (proteus.ADR.LevelModel method) (proteus.elastoplastic.ElastoPlastic.LevelModel method) (proteus.mprans.AddedMass.LevelModel method) (proteus.mprans.CLSVOF.LevelModel method) (proteus.mprans.Dissipation.LevelModel method) (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.Kappa.LevelModel method) (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) (proteus.mprans.MoveMesh.LevelModel method) (proteus.mprans.NCLS.LevelModel method) (proteus.mprans.NCLS3P.LevelModel method) (proteus.mprans.Pres.LevelModel method) (proteus.mprans.PresInc.LevelModel method) (proteus.mprans.PresInit.LevelModel method) (proteus.mprans.RANS2P.LevelModel method) (proteus.mprans.RANS3PF.LevelModel method) (proteus.mprans.RANS3PSed.LevelModel method) (proteus.mprans.RDLS.LevelModel method) (proteus.mprans.SW2D.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) (proteus.mprans.VOF.LevelModel method) (proteus.mprans.VOF3P.LevelModel method) (proteus.mprans.VOS3P.LevelModel method) (proteus.richards.Richards.LevelModel method) (proteus.Transport.OneLevelTransport method) calculateElementResidual() (proteus.mprans.AddedMass.LevelModel method) (proteus.mprans.CLSVOF.LevelModel method) (proteus.mprans.Dissipation.LevelModel method) (proteus.mprans.Kappa.LevelModel method) (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) (proteus.mprans.NCLS.LevelModel method) (proteus.mprans.NCLS3P.LevelModel method) (proteus.mprans.Pres.LevelModel method) (proteus.mprans.PresInc.LevelModel method) (proteus.mprans.PresInit.LevelModel method) (proteus.mprans.RDLS.LevelModel method) (proteus.mprans.VOF.LevelModel method) (proteus.mprans.VOF3P.LevelModel method) (proteus.mprans.VOS3P.LevelModel method) (proteus.richards.Richards.LevelModel method) (proteus.SubsurfaceTransportCoefficients.RE_NCP1_OneLevelTransport method) (proteus.Transport.OneLevelTransport method) calculateElementSpatialBoundaryJacobian() (proteus.TimeIntegration.ExplicitRK_base method) (proteus.TimeIntegration.ForwardEuler method) (proteus.TimeIntegration.TI_base method) calculateElementSpatialJacobian() (proteus.TimeIntegration.ExplicitRK_base method) (proteus.TimeIntegration.ForwardEuler method) (proteus.TimeIntegration.TI_base method) calculateElementSpatialResidual() (proteus.TimeIntegration.ExplicitRK_base method) (proteus.TimeIntegration.ForwardEuler method) (proteus.TimeIntegration.ForwardEuler_H method) (proteus.TimeIntegration.TI_base method) calculateElementSpatialResidualNoDtInMass() (proteus.TimeIntegration.ExplicitRK_base method) calculateExteriorElementBoundaryCoefficients() (proteus.TimeIntegration.ForwardEuler_A method) (proteus.TimeIntegration.TI_base method) (proteus.Transport.OneLevelTransport method) calculateExteriorElementBoundaryCoefficients_inhomogeneous() (proteus.Transport.OneLevelTransport method) calculateExteriorElementBoundaryJacobian() (proteus.Transport.OneLevelTransport method) calculateExteriorElementBoundaryQuadrature() (proteus.ADR.LevelModel method) (proteus.elastoplastic.ElastoPlastic.LevelModel method) (proteus.mprans.AddedMass.LevelModel method) (proteus.mprans.CLSVOF.LevelModel method) (proteus.mprans.Dissipation.LevelModel method) (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.Kappa.LevelModel method) (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) (proteus.mprans.MoveMesh.LevelModel method) (proteus.mprans.NCLS.LevelModel method) (proteus.mprans.NCLS3P.LevelModel method) (proteus.mprans.Pres.LevelModel method) (proteus.mprans.PresInc.LevelModel method) (proteus.mprans.PresInit.LevelModel method) (proteus.mprans.RANS2P.LevelModel method) (proteus.mprans.RANS3PF.LevelModel method) (proteus.mprans.RANS3PSed.LevelModel method) (proteus.mprans.RDLS.LevelModel method) (proteus.mprans.SW2D.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) (proteus.mprans.VOF.LevelModel method) (proteus.mprans.VOF3P.LevelModel method) (proteus.mprans.VOS3P.LevelModel method) (proteus.richards.Richards.LevelModel method) (proteus.Transport.OneLevelTransport method) calculateExteriorElementSpatialBoundaryJacobian() (proteus.TimeIntegration.ExplicitRK_base method) (proteus.TimeIntegration.ForwardEuler method) (proteus.TimeIntegration.TI_base method) calculateExteriorNumericalFlux() (proteus.NumericalFlux.Advection_Diagonal_average method) (proteus.NumericalFlux.Advection_DiagonalUpwind method) (proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_IIPG method) (proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_LDG method) (proteus.NumericalFlux.Advection_DiagonalUpwind_IIPG_exterior method) (proteus.NumericalFlux.ConstantAdvection_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.ConstantAdvection_exterior method) (proteus.NumericalFlux.Curvature_exterior method) (proteus.NumericalFlux.DarcyFC_IIPG_exterior method) (proteus.NumericalFlux.DarcyFCFF_IIPG_exterior method) (proteus.NumericalFlux.DarcyFCPP_IIPG_exterior method) (proteus.NumericalFlux.DarcySplitPressure_IIPG_exterior method) (proteus.NumericalFlux.Diffusion_IIPG_exterior method) (proteus.NumericalFlux.Diffusion_LDG method) (proteus.NumericalFlux.HamiltonJacobi_DiagonalChengShu method) (proteus.NumericalFlux.HamiltonJacobi_DiagonalLesaintRaviart method) (proteus.NumericalFlux.HamiltonJacobi_DiagonalLesaintRaviart_Diffusion_IIPG method) (proteus.NumericalFlux.HamiltonJacobi_DiagonalLesaintRaviart_Diffusion_SIPG_exterior method) (proteus.NumericalFlux.HamiltonJacobi_Pressure_DiagonalLesaintRaviart_Diffusion_SIPG_exterior method) (proteus.NumericalFlux.MixedDarcy_exterior method) (proteus.NumericalFlux.NavierStokes_Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.NF_base method) (proteus.NumericalFlux.Richards_IIPG_exterior method) (proteus.NumericalFlux.RusanovLDG method) (proteus.NumericalFlux.RusanovNumericalFlux method) (proteus.NumericalFlux.RusanovNumericalFlux_Diagonal method) (proteus.NumericalFlux.RusanovNumericalFlux_Diagonal_Diffusion_IIPG method) (proteus.NumericalFlux.ShallowWater_1D method) (proteus.NumericalFlux.ShallowWater_2D method) (proteus.NumericalFlux.ShallowWaterHLL_1D method) (proteus.NumericalFlux.Stokes_Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.StokesP_Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.Stress_IIPG_exterior method) (proteus.NumericalFlux.StrongDirichlet method) calculateGeneralizedInterpolationCoefficients() (proteus.TimeIntegration.BackwardEuler method) (proteus.TimeIntegration.CentralDifference_2ndD method) (proteus.TimeIntegration.TI_base method) calculateGradient_Hessian() (proteus.mprans.beamFEM.FEMTools method) calculateInteriorNumericalFlux() (proteus.NumericalFlux.Advection_Diagonal_average method) (proteus.NumericalFlux.Advection_DiagonalUpwind method) (proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_IIPG method) (proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_LDG method) (proteus.NumericalFlux.Advection_DiagonalUpwind_exterior method) (proteus.NumericalFlux.Advection_DiagonalUpwind_IIPG_exterior method) (proteus.NumericalFlux.ConstantAdvection_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.ConstantAdvection_exterior method) (proteus.NumericalFlux.ConvexOneSonicPointNumericalFlux method) (proteus.NumericalFlux.Curvature_exterior method) (proteus.NumericalFlux.DarcyFC_IIPG_exterior method) (proteus.NumericalFlux.DarcyFCFF_IIPG_exterior method) (proteus.NumericalFlux.DarcyFCPP_IIPG_exterior method) (proteus.NumericalFlux.DarcySplitPressure_IIPG_exterior method) (proteus.NumericalFlux.Diffusion_IIPG_exterior method) (proteus.NumericalFlux.Diffusion_LDG method) (proteus.NumericalFlux.HamiltonJacobi_DiagonalChengShu method) (proteus.NumericalFlux.HamiltonJacobi_DiagonalLesaintRaviart method) (proteus.NumericalFlux.HamiltonJacobi_DiagonalLesaintRaviart_Diffusion_IIPG method) (proteus.NumericalFlux.MixedDarcy_exterior method) (proteus.NumericalFlux.NavierStokes_Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.NF_base method) (proteus.NumericalFlux.NoFlux method) (proteus.NumericalFlux.RusanovLDG method) (proteus.NumericalFlux.RusanovNumericalFlux method) (proteus.NumericalFlux.RusanovNumericalFlux_Diagonal method) (proteus.NumericalFlux.RusanovNumericalFlux_Diagonal_Diffusion_IIPG method) (proteus.NumericalFlux.ShallowWater_1D method) (proteus.NumericalFlux.ShallowWater_2D method) (proteus.NumericalFlux.ShallowWaterHLL_1D method) (proteus.NumericalFlux.Stokes_Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.StokesP_Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.Stress_IIPG_exterior method) calculateMass() (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) calculateNumericalDiffusion() (proteus.ShockCapturing.Eikonal_SC method) (proteus.ShockCapturing.HamiltonJacobi_SC method) (proteus.ShockCapturing.HamiltonJacobiJaffre_SC method) (proteus.ShockCapturing.JaffreGradU_SC method) (proteus.ShockCapturing.NavierStokes_SC method) (proteus.ShockCapturing.NavierStokes_SC_opt method) (proteus.ShockCapturing.ResGrad_SC method) (proteus.ShockCapturing.ResGradFFDarcy_SC method) (proteus.ShockCapturing.ResGradJuanes_SC method) (proteus.ShockCapturing.ResGradQuad_SC method) (proteus.ShockCapturing.ScalarAdvection_SC method) (proteus.ShockCapturing.ShockCapturing_base method) calculatePredictor() (proteus.TimeIntegration.VBDF method) calculateQuadrature() (proteus.Transport.OneLevelTransport method) calculateResidual() (proteus.mprans.beamFEM.FEMTools method) calculateSolution() (proteus.NumericalSolution.NS_base method) (proteus.TimeIntegration.ForwardIntegrator method) (proteus.TimeIntegration.SignedDistanceIntegrator method) (proteus.TimeIntegration.SteadyStateIntegrator method)

calculateSolutionAtQuadrature() (proteus.ADR.LevelModel method) (proteus.elastoplastic.ElastoPlastic.LevelModel method) (proteus.mprans.AddedMass.LevelModel method) (proteus.mprans.CLSVOF.LevelModel method) (proteus.mprans.Dissipation.LevelModel method) (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.Kappa.LevelModel method) (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) (proteus.mprans.MoveMesh.LevelModel method) (proteus.mprans.NCLS.LevelModel method) (proteus.mprans.NCLS3P.LevelModel method) (proteus.mprans.Pres.LevelModel method) (proteus.mprans.PresInc.LevelModel method) (proteus.mprans.PresInit.LevelModel method) (proteus.mprans.RANS2P.LevelModel method) (proteus.mprans.RANS3PF.LevelModel method) (proteus.mprans.RANS3PSed.LevelModel method) (proteus.mprans.RDLS.LevelModel method) (proteus.mprans.SW2D.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) (proteus.mprans.VOF.LevelModel method) (proteus.mprans.VOF3P.LevelModel method) (proteus.mprans.VOS3P.LevelModel method) (proteus.richards.Richards.LevelModel method) (proteus.Transport.OneLevelTransport method) calculateStrongElementSpatialResidual() (proteus.TimeIntegration.ForwardEuler method) (proteus.TimeIntegration.TI_base method) calculateStrongResidualAndAdjoint() (proteus.Transport.OneLevelTransport method) calculateSubgridError() (proteus.ADR.SubgridError method) (proteus.mprans.Dissipation.SubgridError method) (proteus.mprans.Kappa.SubgridError method) (proteus.mprans.NCLS.SubgridError method) (proteus.mprans.NCLS3P.SubgridError method) (proteus.mprans.RANS2P.SubgridError method) (proteus.mprans.RANS3PF.SubgridError method) (proteus.mprans.RANS3PSed.SubgridError method) (proteus.mprans.RDLS.SubgridError method) (proteus.mprans.SW2D.SubgridError method) (proteus.mprans.VOF.SubgridError method) (proteus.mprans.VOF3P.SubgridError method) (proteus.mprans.VOS3P.SubgridError method) (proteus.SubgridError.Advection_ASGS method) (proteus.SubgridError.AdvectionDiffusionReaction_ASGS method) (proteus.SubgridError.AdvectionDiffusionReactionHaukeSangalliInterpolant_ASGS method) (proteus.SubgridError.AdvectionDiffusionReactionHaukeSangalliInterpolantWithTransientSubScales_ASGS method) (proteus.SubgridError.AdvectionDiffusionReactionTransientSubscales_ASGS method) (proteus.SubgridError.AdvectionLag_ASGS method) (proteus.SubgridError.DarcyFC_ASGS method) (proteus.SubgridError.FFDarcyFC_ASGS method) (proteus.SubgridError.HamiltonJacobi_ASGS method) (proteus.SubgridError.HamiltonJacobi_ASGS_opt method) (proteus.SubgridError.HamiltonJacobiDiffusionReaction_ASGS method) (proteus.SubgridError.NavierStokesASGS_velocity_pressure method) (proteus.SubgridError.NavierStokesASGS_velocity_pressure_opt method) (proteus.SubgridError.NavierStokesASGS_velocity_pressure_optV2 method) (proteus.SubgridError.NavierStokesTransientSubScalesASGS_velocity_pressure method) (proteus.SubgridError.NavierStokesWithBodyForceASGS_velocity_pressure method) (proteus.SubgridError.SGE_base method) (proteus.SubgridError.ShallowWater_CFL method) (proteus.SubgridError.SkewStabilization_1 method) (proteus.SubgridError.StokesASGS_velocity method) (proteus.SubgridError.StokesASGS_velocity_pressure method) (proteus.SubgridError.StokesStabilization_1 method) (proteus.SubgridError.TwophaseStokes_LS_FC_ASGS method) calculateSubgridErrorInterpolants() (proteus.SubgridError.AdvectionDiffusionReactionHaukeSangalliInterpolant_ASGS method) (proteus.SubgridError.AdvectionDiffusionReactionHaukeSangalliInterpolantWithTransientSubScales_ASGS method) calculateU() (proteus.TimeIntegration.ForwardEuler_H method) (proteus.TimeIntegration.OuterTheta method) (proteus.TimeIntegration.TI_base method) calculateValuesAtMeshNodes() (proteus.FemTools.FiniteElementFunction method) center (proteus.mprans.BoundaryConditions.RelaxationZone attribute) CentralDifference_2ndD (class in proteus.TimeIntegration) ChBody (proteus.mbd.CouplingFSI.ProtChBody attribute) ChBodyAddedMass (proteus.mbd.CouplingFSI.ProtChBody attribute) chebyshev_superlu_constructor() (proteus.LinearSolvers.ChebyshevSemiIteration class method) ChebyshevSemiIteration (class in proteus.LinearSolvers) checkConvergence() (proteus.mprans.beamFEM.FEMTools method) checkFileClose() (proteus.AuxiliaryVariables.PT123velocityGenerator method) checkpoint() (proteus.MeshAdaptPUMI.Checkpoint.Checkpointer method) Checkpointer (class in proteus.MeshAdaptPUMI.Checkpoint) checkProblem() (proteus.TwoPhaseFlow.TwoPhaseFlowProblem.TwoPhaseFlowProblem method) ChMeshh (proteus.mbd.CouplingFSI.ProtChMesh attribute) choose_dt() (proteus.mprans.GN_SW2DCV.RKEV method) (proteus.mprans.NCLS.RKEV method) (proteus.mprans.SW2DCV.RKEV method) (proteus.mprans.VOF.RKEV method) (proteus.mprans.VOF3P.RKEV method) (proteus.mprans.VOS3P.RKEV method) (proteus.TimeIntegration.BackwardEuler_cfl method) (proteus.TimeIntegration.ExplicitRK_base method) (proteus.TimeIntegration.FLCBDF method) (proteus.TimeIntegration.ForwardEuler method) (proteus.TimeIntegration.ForwardEuler_A method) (proteus.TimeIntegration.ForwardEuler_H method) (proteus.TimeIntegration.OuterTheta method) (proteus.TimeIntegration.PsiTCtte method) (proteus.TimeIntegration.PsiTCtte_new method) (proteus.TimeIntegration.TI_base method) (proteus.TimeIntegration.VBDF method) choose_dt_fromError() (proteus.StepControl.GustafssonFullNewton_dt_controller method) choose_dt_model() (proteus.mprans.RDLS.PsiTC method) (proteus.StepControl.FLCBDF_controller method) (proteus.StepControl.GustafssonFullNewton_dt_controller method) (proteus.StepControl.HeuristicNL_dt_controller method) (proteus.StepControl.Min_dt_cfl_controller method) (proteus.StepControl.Min_dt_controller method) (proteus.StepControl.Min_dt_RKcontroller method) (proteus.StepControl.Osher_controller method) (proteus.StepControl.Osher_PsiTC_controller method) (proteus.StepControl.Osher_PsiTC_controller2 method) (proteus.StepControl.PsiTCtte_controller method) (proteus.StepControl.SC_base method) choose_dt_solverFailure() (proteus.StepControl.GustafssonFullNewton_dt_controller method) choose_dt_solverSuccess() (proteus.StepControl.GustafssonFullNewton_dt_controller method) choose_dt_system() (proteus.SplitOperator.ISO_fixed_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep_SS method) (proteus.SplitOperator.Sequential_MinFLCBDFModelStep method) (proteus.SplitOperator.Sequential_MinModelStep method) (proteus.SplitOperator.Sequential_NonUniformFixedStep method) (proteus.SplitOperator.Sequential_tnList method) (proteus.SplitOperator.SequentialNotInOrder_MinAdaptiveModelStep method) (proteus.SplitOperator.SequentialNotInOrder_MinFLCBDFModelStep method) (proteus.SplitOperator.SO_base method) chooseOrder() (proteus.TimeIntegration.VBDF method) chrono_dt (proteus.mbd.CouplingFSI.ProtChSystem attribute) ChSystem (proteus.mbd.CouplingFSI.ProtChSystem attribute) ChSystemSMC (proteus.mbd.CouplingFSI.ProtChSystem attribute) Circle (class in proteus.SpatialTools) clear_xml() (proteus.Archiver.AR_base method) CLevelSetCoefficients (class in proteus.TransportCoefficients) cLevelSetCoefficientsEvaluate() (proteus.TransportCoefficients.CLevelSetCoefficients method) close() (proteus.Archiver.AR_base method) (proteus.LatexReport.LatexResultsSummary method) closeArchive() (proteus.NumericalSolution.NS_base method) closeLatexReport() (in module proteus.LatexReport) closeLog() (in module proteus.Profiling) clsvof_advective (proteus.mprans.BoundaryConditions.BC_RANS attribute) clsvof_diffusive (proteus.mprans.BoundaryConditions.BC_RANS attribute) clsvof_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) CLSVOFNewton (class in proteus.NonlinearSolvers) cmeshTools (proteus.MeshTools.MultilevelEdgeMesh attribute) (proteus.MeshTools.MultilevelTriangularMesh attribute) cmeshToolsComputeGeometricInfo_tetrahedron() (in module proteus.cmeshTools) CockburnNotesLimiter2d_base (class in proteus.TimeIntegration) Coefficients (class in proteus.ADR) (class in proteus.elastoplastic.ElastoPlastic) (class in proteus.mprans.AddedMass) (class in proteus.mprans.CLSVOF) (class in proteus.mprans.Dissipation) (class in proteus.mprans.GN_SW2DCV) (class in proteus.mprans.Kappa) (class in proteus.mprans.MCorr) (class in proteus.mprans.MCorr3P) (class in proteus.mprans.MoveMesh) (class in proteus.mprans.MoveMeshMonitor) (class in proteus.mprans.NCLS) (class in proteus.mprans.NCLS3P) (class in proteus.mprans.Pres) (class in proteus.mprans.PresInc) (class in proteus.mprans.PresInit) (class in proteus.mprans.RANS2P) (class in proteus.mprans.RANS2P_IB) (class in proteus.mprans.RANS3PF) (class in proteus.mprans.RANS3PSed) (class in proteus.mprans.RDLS) (class in proteus.mprans.SW2D) (class in proteus.mprans.SW2DCV) (class in proteus.mprans.VOF) (class in proteus.mprans.VOF3P) (class in proteus.mprans.VOS3P) (class in proteus.richards.Richards) coefficients (in module proteus.default_p) cof() (in module proteus.EGeometry) CombineWaves (class in proteus.WaveTools) Comm (class in proteus.Comm) CompositeTetrahedron (class in proteus.Quadrature) CompositeTrapezoidalEdge (class in proteus.Quadrature) CompositeTrapezoidalTriangle (class in proteus.Quadrature) CompositeTriangle (class in proteus.Quadrature) CompressibleFractionalFlowPressureMualemVanGenuchten (class in proteus.SubsurfaceTransportCoefficients) CompressibleFractionalFlowSaturationMualemVanGenuchten (class in proteus.SubsurfaceTransportCoefficients) compute_waves() (proteus.mprans.GN_SW2DCV.LevelModel method) computeAlphaCoefs() (proteus.TimeIntegration.CockburnNotesLimiter2d_base method) computeAverages() (proteus.LinearSolvers.LinearSolver method) (proteus.NonlinearSolvers.NonlinearSolver method) computeBDM1projectionMatrices() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_DG_BDM method) (proteus.PostProcessingTools.VPP_PWL_BDM method) (proteus.PostProcessingTools.VPP_PWL_BDM_OPT method) computeBDM2projectionMatrices() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) computeBoundsAndRhsHigh() (proteus.mprans.GN_SW2DCV.LevelModel method) computeCockburnDGlimiterArrays2d() (proteus.TimeIntegration.CockburnNotesLimiter2d_base method) computeConvergenceRates() (proteus.LinearSolvers.LinearSolver method) (proteus.NonlinearSolvers.NonlinearSolver method) computeDEIMresiduals() (proteus.NonlinearSolvers.POD_DEIM_Newton method) computeElementMaterials() (proteus.MeshAdaptPUMI.AdaptHelper.PUMI_helper method) computeElementNeighborShapeGradients() (proteus.TimeIntegration.UnstructuredLimiter_base method) computeErrorEstimate() (proteus.TimeIntegration.VBDF method) computeEV() (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) computeGeometricInfo() (proteus.MeshTools.Edge method) (proteus.MeshTools.EdgeMesh method) (proteus.MeshTools.HexahedralMesh method) (proteus.MeshTools.Mesh method) (proteus.MeshTools.MultilevelEdgeMesh method) (proteus.MeshTools.MultilevelHexahedralMesh method) (proteus.MeshTools.MultilevelNURBSMesh method) (proteus.MeshTools.MultilevelTetrahedralMesh method) (proteus.MeshTools.MultilevelTriangularMesh method) (proteus.MeshTools.Node method) (proteus.MeshTools.Quadrilateral method) (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.Tetrahedron method) (proteus.MeshTools.Triangle method) (proteus.MeshTools.TriangularMesh method) (proteus.PostProcessingTools.VelocityPostProcessingAlgorithmBase method) (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_DG_BDM method) (proteus.PostProcessingTools.VPP_PWL_BDM method) (proteus.PostProcessingTools.VPP_PWL_BDM2 method) (proteus.PostProcessingTools.VPP_PWL_BDM_OPT method) computeGeometricInfo_edge() (in module proteus.cmeshTools) computeGeometricInfo_hexahedron() (in module proteus.cmeshTools) computeGeometricInfo_NURBS() (in module proteus.cmeshTools) computeGeometricInfo_quadrilateral() (in module proteus.cmeshTools) computeGeometricInfo_tetrahedron() (in module proteus.cmeshTools) computeGeometricInfo_triangle() (in module proteus.cmeshTools) computeNodalQuadratureInfo() (proteus.SimTools.SimulationProcessor method) computePreStep() (proteus.mprans.GN_SW2DCV.LevelModel method) computeResidual() (proteus.LinearSolvers.LinearSolver method) (proteus.NonlinearSolvers.NonlinearSolver method) (proteus.NonlinearSolvers.POD_Newton method) computeWaterline() (proteus.mprans.NCLS.LevelModel method) (proteus.mprans.NCLS3P.LevelModel method) ConservationHistoryLS (class in proteus.AuxiliaryVariables) ConservationHistoryMC (class in proteus.AuxiliaryVariables) conservationNorm() (in module proteus.mprans.MCorr) (in module proteus.mprans.MCorr3P) ConservativeHead2PMualemVanGenuchten (class in proteus.TransportCoefficients) ConservativeHeadRichardsBrooksCoreyBurdine (class in proteus.TransportCoefficients) ConservativeHeadRichardsBrooksCoreyBurdineHet (class in proteus.TransportCoefficients) conservativeHeadRichardsBrooksCoreyBurdineHetEvaluate() (proteus.TransportCoefficients.ConservativeHeadRichardsBrooksCoreyBurdineHet method) conservativeHeadRichardsBrooksCoreyBurdineHomEvaluate() (proteus.TransportCoefficients.ConservativeHeadRichardsBrooksCoreyBurdine method) ConservativeHeadRichardsJLeverett (class in proteus.TransportCoefficients) ConservativeHeadRichardsJLeverettAni (class in proteus.TransportCoefficients) conservativeHeadRichardsJLeverettAniEvaluate() (proteus.TransportCoefficients.ConservativeHeadRichardsJLeverettAni method) conservativeHeadRichardsJLeverettEvaluate() (proteus.TransportCoefficients.ConservativeHeadRichardsJLeverett method) conservativeHeadRichardsL2projBndMualemVanGenuchtenHomEvaluate() (proteus.TransportCoefficients.ConservativeHeadRichardsL2projMualemVanGenuchten method) ConservativeHeadRichardsL2projMualemVanGenuchten (class in proteus.TransportCoefficients) ConservativeHeadRichardsL2projMualemVanGenuchtenBlockHet (class in proteus.TransportCoefficients) conservativeHeadRichardsL2projMualemVanGenuchtenHetEvaluate() (proteus.TransportCoefficients.ConservativeHeadRichardsL2projMualemVanGenuchtenBlockHet method) conservativeHeadRichardsL2projMualemVanGenuchtenHomEvaluate() (proteus.TransportCoefficients.ConservativeHeadRichardsL2projMualemVanGenuchten method) ConservativeHeadRichardsMualemVanGenuchten (class in proteus.SubsurfaceTransportCoefficients) (class in proteus.TransportCoefficients) conservativeHeadRichardsMualemVanGenuchten_sd_het() (proteus.richards.Richards.Coefficients method) (proteus.SubsurfaceTransportCoefficients.ConservativeHeadRichardsMualemVanGenuchten method) ConservativeHeadRichardsMualemVanGenuchtenBlockHet (class in proteus.TransportCoefficients) ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2 (class in proteus.TransportCoefficients) ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2withUpwind (class in proteus.TransportCoefficients) ConservativeHeadRichardsMualemVanGenuchtenHet (class in proteus.TransportCoefficients) conservativeHeadRichardsMualemVanGenuchtenHetEvaluate() (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHet method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenHet method) conservativeHeadRichardsMualemVanGenuchtenHetEvaluateV2() (proteus.richards.Richards.Coefficients method) (proteus.SubsurfaceTransportCoefficients.ConservativeHeadRichardsMualemVanGenuchten method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2 method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2withUpwind method) conservativeHeadRichardsMualemVanGenuchtenHetEvaluateV2withUpwind() (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2withUpwind method) conservativeHeadRichardsMualemVanGenuchtenHetEvaluateV2withUpwindAndHarm() (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2withUpwind method) conservativeHeadRichardsMualemVanGenuchtenHetEvaluateV2withUpwindAndHarm_sd() (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2withUpwind method) conservativeHeadRichardsMualemVanGenuchtenHomEvaluate() (proteus.TransportCoefficients.ConservativeHead2PMualemVanGenuchten method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchten method) ConservativeSatRichardsMualemVanGenuchten (class in proteus.TransportCoefficients) conservativeSatRichardsMualemVanGenuchtenHomEvaluate() (proteus.TransportCoefficients.ConservativeSatRichardsMualemVanGenuchten method) ConservativeTotalHeadRichardsMualemVanGenuchten (class in proteus.TransportCoefficients) conservativeTotalHeadRichardsMualemVanGenuchtenHomEvaluate() (proteus.TransportCoefficients.ConservativeTotalHeadRichardsMualemVanGenuchten method) conservativeVelocityCalculation() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) ConstantAdvection_Diffusion_IIPG_exterior (class in proteus.NumericalFlux) ConstantAdvection_Diffusion_NIPG_exterior (class in proteus.NumericalFlux) ConstantAdvection_Diffusion_SIPG_exterior (class in proteus.NumericalFlux) ConstantAdvection_exterior (class in proteus.NumericalFlux) ConstantDiffusion_SC (in module proteus.ShockCapturing) ConstantNullSpace (class in proteus.LinearSolvers) ConstantVelocityLevelSet (class in proteus.TransportCoefficients) constantVelocityLevelSetEvaluate() (proteus.TransportCoefficients.ConstantVelocityLevelSet method) constructElementBoundaryElementsArray() (in module proteus.cmeshTools) constructShape() (proteus.mprans.SpatialTools.Tank2D method) (proteus.SpatialTools.Cylinder method) (proteus.SpatialTools.Sphere method) constructTriangularMeshOnRectangle() (proteus.MeshTools.TriangularMesh method) containing_element_array (proteus.mbd.CouplingFSI.ProtChMoorings attribute) context (in module proteus.Context) converged() (proteus.LinearSolvers.KSP_petsc4py method) (proteus.LinearSolvers.LinearSolver method) (proteus.NonlinearSolvers.NewtonNS method) (proteus.NonlinearSolvers.NonlinearSolver method) (proteus.SplitOperator.ISO_fixed_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep_SS method) (proteus.SplitOperator.Sequential_MinFLCBDFModelStep method) (proteus.SplitOperator.Sequential_MinModelStep method) (proteus.SplitOperator.SO_base method) convertFromPUMI() (proteus.MeshTools.Mesh method) ConvexOneSonicPointNumericalFlux (class in proteus.NumericalFlux) copy() (proteus.FemTools.FiniteElementFunction method) copyExteriorElementBoundaryValuesFromElementBoundaryValues() (proteus.mprans.VOF.Coefficients method) (proteus.mprans.VOF3P.Coefficients method) (proteus.mprans.VOS3P.Coefficients method) (proteus.TransportCoefficients.VolumeAveragedVOFCoefficients method) cos2s() (in module proteus.WaveTools) coshkzd_test() (in module proteus.WaveTools) costap() (in module proteus.WaveTools) count (proteus.mprans.SpatialTools.Tank2D attribute) (proteus.mprans.SpatialTools.Tank3D attribute) (proteus.SpatialTools.Circle attribute) (proteus.SpatialTools.Cuboid attribute) (proteus.SpatialTools.CustomShape attribute) (proteus.SpatialTools.Cylinder attribute) (proteus.SpatialTools.Rectangle attribute) (proteus.SpatialTools.ShapeSTL attribute) (proteus.SpatialTools.Sphere attribute) count_all (proteus.SpatialTools.Shape attribute) create() (proteus.LinearAlgebraTools.OperatorShell method) (proteus.LinearAlgebraTools.SparseMatShell method) create_dataset_async() (proteus.Archiver.AR_base method) create_dataset_sync() (proteus.Archiver.AR_base method) create_DOF_lists() (proteus.LinearSolvers.BlockedDofOrderType method) (proteus.LinearSolvers.DofOrderInfo method) (proteus.LinearSolvers.InterlacedDofOrderType method) create_IS() (proteus.LinearSolvers.DofOrderInfo method) create_no_dirichlet_bdy_nodes_is() (proteus.LinearSolvers.InterlacedDofOrderType method) create_ParMat_from_OperatorConstructor() (proteus.LinearAlgebraTools.ParMat_petsc4py class method) create_petsc_ksp_obj() (proteus.LinearAlgebraTools.InvOperatorShell method) create_vel_DOF_IS() (proteus.LinearSolvers.InterlacedDofOrderType method) CrouzeixRaviartWithNodalBasis (class in proteus.FemTools) csmoothers (proteus.LinearSolvers.GaussSeidel attribute) (proteus.LinearSolvers.Jacobi attribute) (proteus.LinearSolvers.StarBILU attribute) (proteus.LinearSolvers.StarILU attribute) csr_2_petsc() (in module proteus.LinearAlgebraTools) csr_2_petsc_mpiaij() (in module proteus.LinearAlgebraTools) ct (proteus.BoundaryConditions.BC_Base attribute) CubeGaussQuadrature (class in proteus.Quadrature) CubeNodalInterpolationConditions (class in proteus.FemTools) Cuboid (class in proteus.SpatialTools) Curvature_exterior (class in proteus.NumericalFlux) CustomShape (class in proteus.SpatialTools) Cylinder (class in proteus.SpatialTools)

D

D_base (class in proteus.Domain) DAE_base (class in proteus.AnalyticalSolutions) DarcyFC_ASGS (class in proteus.SubgridError) DarcyFC_IIPG_exterior (class in proteus.NumericalFlux) DarcyFCFF_IIPG_exterior (class in proteus.NumericalFlux) DarcyFCPP_IIPG_exterior (class in proteus.NumericalFlux) DarcySplitPressure_IIPG_exterior (class in proteus.NumericalFlux) DecodeModel() (proteus.MeshAdaptPUMI.Checkpoint.Checkpointer method) decompose_tseries() (in module proteus.WaveTools) default_density_n_parameters (proteus.SubsurfaceTransportCoefficients.TwophaseDarcyFlow_base attribute) default_density_w_parameters (proteus.SubsurfaceTransportCoefficients.TwophaseDarcyFlow_base attribute) defaultFlags (proteus.SimTools.SimulationProcessor attribute) definedOnLocalElementBoundary() (proteus.FemTools.CubeNodalInterpolationConditions method) (proteus.FemTools.FaceBarycenterInterpolationConditions method) definedOnlocalElementBoundary() (proteus.FemTools.InterpolationConditions method) definedOnLocalElementBoundary() (proteus.FemTools.MonomialInterpolationConditions method) (proteus.FemTools.NodalInterpolationConditions method) (proteus.FemTools.p0InterpolationConditions method) (proteus.FemTools.P1BubbleInterpolationConditions method) (proteus.FemTools.P1P0BubbleInterpolationConditions method) (proteus.FemTools.QuadraticLagrangeCubeNodalInterpolationConditions method) (proteus.FemTools.QuadraticLagrangeNodalInterpolationConditions method) defineTraceFunctions() (proteus.FemTools.LocalFunctionSpace method) deim_alg() (in module proteus.deim_utils) deim_utils (proteus.NonlinearSolvers.POD_Newton attribute) delta_h() (proteus.mprans.RANS2P_IB.Coefficients method) dense_numpy_2_petsc4py() (in module proteus.LinearAlgebraTools) depth (proteus.WaveTools.DirectionalWaves attribute) (proteus.WaveTools.MultiSpectraRandomWaves attribute) (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) det() (in module proteus.EGeometry) df (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) DG_AffineLinearOnSimplexWithNodalBasis (class in proteus.FemTools) DG_AffineP0_OnSimplexWithMonomialBasis (class in proteus.FemTools) DG_AffineP1_OnSimplexWithMonomialBasis (class in proteus.FemTools) DG_AffineP2_OnSimplexWithMonomialBasis (class in proteus.FemTools) DG_AffineP3_OnSimplexWithMonomialBasis (class in proteus.FemTools) DG_AffineP4_OnSimplexWithMonomialBasis (class in proteus.FemTools) DG_AffineP5_OnSimplexWithMonomialBasis (class in proteus.FemTools) DG_AffineP6_OnSimplexWithMonomialBasis (class in proteus.FemTools) DG_AffinePolynomialsOnSimplexWithMonomialBasis (class in proteus.FemTools) DG_AffineQuadraticOnSimplexWithNodalBasis (class in proteus.FemTools) DG_Constants (class in proteus.FemTools) DGlimiterDurlofskyP1Lagrange2d (class in proteus.TimeIntegration) DGlimiterDurlofskyP1Lagrange2d_Sw (class in proteus.TimeIntegration) DGlimiterDurlofskyP1Lagrange3d (class in proteus.TimeIntegration) DGlimiterP1Lagrange1d (class in proteus.TimeIntegration) DGlimiterP1Lagrange1d_Sw (class in proteus.TimeIntegration) DGlimiterP1Lagrange2d (class in proteus.TimeIntegration) DGlimiterP2Lagrange1d (class in proteus.TimeIntegration) DGlimiterP2Lagrange1d_Sw (class in proteus.TimeIntegration) DGlimiterP2Lagrange2d (class in proteus.TimeIntegration) DGlimiterPkMonomial1d (class in proteus.TimeIntegration) DGlimiterPkMonomial1d_Sw (class in proteus.TimeIntegration)

DGlimiterPkMonomial2d (class in proteus.TimeIntegration) Diffusion_IIPG_exterior (class in proteus.NumericalFlux) Diffusion_LDG (class in proteus.NumericalFlux) Diffusion_SIPG_exterior (class in proteus.NumericalFlux) diffusiveFluxBoundaryConditions (in module proteus.default_p) diffusiveFluxOfX() (proteus.AnalyticalSolutions.AS_base method) (proteus.AnalyticalSolutions.LinearADR_Sine method) diffusiveFluxOfXT() (proteus.AnalyticalSolutions.LinearAD_DiracIC method) diffusiveWave1DCoefficientsEvaluate() (proteus.TransportCoefficients.DiffusiveWave_1D method) diffusiveWave2DCoefficientsEvaluate() (proteus.TransportCoefficients.DiffusiveWave_2D method) DiffusiveWave_1D (class in proteus.TransportCoefficients) DiffusiveWave_2D (class in proteus.TransportCoefficients) dim_dof (proteus.FemTools.FiniteElementFunction attribute) dirCheck() (in module proteus.WaveTools) DirectionalWaves (class in proteus.WaveTools) dirichletConditions (in module proteus.default_p) DiscontinuousGalerkinDOFMap (class in proteus.FemTools) DiscreteLaplaceOperator (class in proteus.TransportCoefficients) DiscreteMassMatrix (class in proteus.TransportCoefficients) DiscreteTwoPhaseAdvectionOperator (class in proteus.TransportCoefficients) Dispatcher (class in proteus.Profiling) dispersion() (in module proteus.WaveTools) display_src() (in module proteus.iproteus) dissipation_advective (proteus.mprans.BoundaryConditions.BC_RANS attribute) dissipation_diffusive (proteus.mprans.BoundaryConditions.BC_RANS attribute) dissipation_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) dist_search (proteus.mbd.CouplingFSI.ProtChSystem attribute) dist_search() (proteus.mprans.MoveMeshMonitor.Coefficients method) distance() (in module proteus.MeshTools) dof (proteus.FemTools.FiniteElementFunction attribute) DOFBoundaryConditions (class in proteus.FemTools) DOFBoundaryConditions_alt (class in proteus.FemTools) DOFMap (class in proteus.FemTools) DofOrderInfo (class in proteus.LinearSolvers) domain (in module proteus.default_p) DoNothing (class in proteus.NumericalFlux) dot() (in module proteus.EGeometry) dragAlpha (proteus.mprans.BoundaryConditions.RelaxationZone attribute) dragBeta (proteus.mprans.BoundaryConditions.RelaxationZone attribute) drOfUX() (proteus.AnalyticalSolutions.AS_base method) (proteus.AnalyticalSolutions.LinearADR_Sine method) (proteus.AnalyticalSolutions.PoissonsEquation method) drOfUXT() (proteus.AnalyticalSolutions.LinearADR_Decay_DiracIC method) (proteus.AnalyticalSolutions.NonlinearADR_Decay_DiracIC method) DT (in module proteus.default_n) dt (proteus.mbd.CouplingFSI.ProtChBody attribute) dt_fluid (proteus.mbd.CouplingFSI.ProtChSystem attribute) dt_fluid_last (proteus.mbd.CouplingFSI.ProtChSystem attribute) dt_init (proteus.mbd.CouplingFSI.ProtChSystem attribute) dt_predict (proteus.mbd.CouplingFSI.ProtChBody attribute) dt_system_fixed (in module proteus.default_so) DummyNewton (class in proteus.mprans.MCorr) (class in proteus.mprans.MCorr3P) duOfX() (proteus.AnalyticalSolutions.LinearADR_Sine method) duOfXT() (proteus.AnalyticalSolutions.AS_base method) (proteus.AnalyticalSolutions.LinearAD_DiracIC method)

E

eadj() (in module proteus.EGeometry) ecof() (in module proteus.EGeometry) ecross() (in module proteus.EGeometry) eddyViscosity_2D_Update() (proteus.TransportCoefficients.TwophaseReynoldsAveragedNavierStokes_AlgebraicClosure method) eddyViscosity_2D_Update_sd() (proteus.TransportCoefficients.TwophaseReynoldsAveragedNavierStokes_AlgebraicClosure method) eddyViscosity_3D_Update() (proteus.TransportCoefficients.TwophaseReynoldsAveragedNavierStokes_AlgebraicClosure method) eddyViscosity_3D_Update_sd() (proteus.TransportCoefficients.TwophaseReynoldsAveragedNavierStokes_AlgebraicClosure method) edet() (in module proteus.EGeometry) Edge (class in proteus.MeshTools) EdgeGrid (class in proteus.MeshTools) edgeMap (proteus.MeshTools.Tetrahedron attribute) (proteus.MeshTools.Triangle attribute) EdgeMesh (class in proteus.MeshTools) edot() (in module proteus.EGeometry) Eikonal_SC (class in proteus.ShockCapturing) EikonalEquationCoefficients (class in proteus.TransportCoefficients) eikonalEquationEvaluate() (proteus.TransportCoefficients.EikonalEquationCoefficients method) einv() (in module proteus.EGeometry) Element (class in proteus.MeshTools) element (proteus.MeshTools.MeshParallelPartitioningTypes attribute) ElementBoundaryDOFMap (class in proteus.FemTools) elementBoundaryQuadrature (in module proteus.default_n) ElementConstantNewton (class in proteus.mprans.MCorr) (class in proteus.mprans.MCorr3P) elementConstantSolve() (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) ElementMaps (class in proteus.FemTools) ElementNewton (class in proteus.mprans.MCorr) (class in proteus.mprans.MCorr3P) elementQuadrature (in module proteus.default_n) elements (proteus.mbd.CouplingFSI.ProtChMoorings attribute) elementSolve() (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) eListDaxpy() (in module proteus.EGeometry) EncodeModel() (proteus.MeshAdaptPUMI.Checkpoint.Checkpointer method) endSequential() (proteus.Comm.Comm method) endTimeSeriesEnsight() (proteus.FemTools.ParametricFiniteElementSpace method) energyDot() (in module proteus.LinearAlgebraTools) energyNorm() (in module proteus.LinearAlgebraTools) enorm() (in module proteus.EGeometry) epsFact_porous (proteus.mprans.BoundaryConditions.RelaxationZone attribute) epsFact_solid (proteus.mprans.BoundaryConditions.RelaxationZone attribute) errorFailure() (proteus.StepControl.FLCBDF_controller method) (proteus.StepControl.GustafssonFullNewton_dt_controller method) (proteus.StepControl.HeuristicNL_dt_controller method) (proteus.StepControl.Min_dt_controller_FCT method) (proteus.StepControl.SC_base method) ErrorNorms (proteus.SimTools.SimulationProcessor attribute) ErrorQuantities (proteus.SimTools.SimulationProcessor attribute) ErrorTimes (proteus.SimTools.SimulationProcessor attribute) ErrorTypes (proteus.SimTools.SimulationProcessor attribute) estimate_mt() (proteus.ADR.LevelModel method) (proteus.elastoplastic.ElastoPlastic.LevelModel method) (proteus.mprans.AddedMass.LevelModel method) (proteus.mprans.CLSVOF.LevelModel method) (proteus.mprans.Dissipation.LevelModel method) (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.Kappa.LevelModel method) (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) (proteus.mprans.MoveMesh.LevelModel method) (proteus.mprans.NCLS.LevelModel method) (proteus.mprans.NCLS3P.LevelModel method) (proteus.mprans.Pres.LevelModel method) (proteus.mprans.PresInc.LevelModel method) (proteus.mprans.PresInit.LevelModel method) (proteus.mprans.RANS2P.LevelModel method) (proteus.mprans.RANS3PF.LevelModel method) (proteus.mprans.RANS3PSed.LevelModel method) (proteus.mprans.RDLS.LevelModel method) (proteus.mprans.SW2D.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) (proteus.mprans.VOF.LevelModel method) (proteus.mprans.VOF3P.LevelModel method) (proteus.mprans.VOS3P.LevelModel method) (proteus.richards.Richards.LevelModel method) (proteus.Transport.OneLevelTransport method) estimateError() (proteus.StepControl.GustafssonFullNewton_dt_controller method) eta (proteus.WaveTools.RandomNLWaves attribute) (proteus.WaveTools.TimeSeries attribute) eta() (proteus.WaveTools.CombineWaves method) (proteus.WaveTools.DirectionalWaves method) (proteus.WaveTools.MonochromaticWaves method) (proteus.WaveTools.MultiSpectraRandomWaves method) (proteus.WaveTools.NewWave method) (proteus.WaveTools.RandomNLWavesFast method) (proteus.WaveTools.RandomWaves method) (proteus.WaveTools.SolitaryWave method) (proteus.WaveTools.SteadyCurrent method) eta_2ndOrder() (proteus.WaveTools.RandomNLWaves method) eta_linear (proteus.WaveTools.RandomNLWaves attribute) eta_long() (proteus.WaveTools.RandomNLWaves method) eta_mode() (in module proteus.WaveTools) eta_overall() (proteus.WaveTools.RandomNLWaves method) eta_setUp() (proteus.WaveTools.RandomNLWaves method) eta_short() (proteus.WaveTools.RandomNLWaves method) etaDirect() (proteus.WaveTools.TimeSeries method) etaWindow() (proteus.WaveTools.TimeSeries method) ETen() (in module proteus.EGeometry) etensor() (in module proteus.EGeometry) etenten() (in module proteus.EGeometry) etenvec() (in module proteus.EGeometry) etenvecdotvec() (in module proteus.EGeometry) etrans() (in module proteus.EGeometry) etriple() (in module proteus.EGeometry) evaluate() (proteus.ADR.Coefficients method) (proteus.elastoplastic.ElastoPlastic.Coefficients method) (proteus.mprans.AddedMass.Coefficients method) (proteus.mprans.CLSVOF.Coefficients method) (proteus.mprans.Dissipation.Coefficients method) (proteus.mprans.GN_SW2DCV.Coefficients method) (proteus.mprans.Kappa.Coefficients method) (proteus.mprans.MCorr.Coefficients method) (proteus.mprans.MCorr3P.Coefficients method) (proteus.mprans.MoveMesh.Coefficients method) (proteus.mprans.NCLS.Coefficients method) (proteus.mprans.NCLS3P.Coefficients method) (proteus.mprans.Pres.Coefficients method) (proteus.mprans.PresInc.Coefficients method) (proteus.mprans.PresInit.Coefficients method) (proteus.mprans.RANS2P.Coefficients method) (proteus.mprans.RANS3PF.Coefficients method) (proteus.mprans.RANS3PSed.Coefficients method) (proteus.mprans.RDLS.Coefficients method) (proteus.mprans.SW2D.Coefficients method) (proteus.mprans.SW2DCV.Coefficients method) (proteus.mprans.VOF.Coefficients method) (proteus.mprans.VOF3P.Coefficients method) (proteus.mprans.VOS3P.Coefficients method) (proteus.richards.Richards.Coefficients method) (proteus.SubsurfaceTransportCoefficients.ConservativeHeadRichardsMualemVanGenuchten method) (proteus.SubsurfaceTransportCoefficients.GroundwaterTransportCoefficients method) (proteus.SubsurfaceTransportCoefficients.MultiphaseGroundwaterTransportCoefficients method) (proteus.SubsurfaceTransportCoefficients.SinglePhaseDarcyCoefficients method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_compressible_split_pressure method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_compressible_split_saturation method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_fc method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_fc_pp method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_incompressible_split_pp_pressure method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_incompressible_split_pp_saturation method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_incompressible_split_pressure method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_incompressible_split_saturation method) (proteus.SubsurfaceTransportCoefficients.VariablySaturatedGroundwaterEnergyTransportCoefficients method) (proteus.TransportCoefficients.BuckleyLeverettLiuExample method) (proteus.TransportCoefficients.CLevelSetCoefficients method) (proteus.TransportCoefficients.ConservativeHead2PMualemVanGenuchten method) (proteus.TransportCoefficients.ConservativeHeadRichardsBrooksCoreyBurdine method) (proteus.TransportCoefficients.ConservativeHeadRichardsBrooksCoreyBurdineHet method) (proteus.TransportCoefficients.ConservativeHeadRichardsJLeverett method) (proteus.TransportCoefficients.ConservativeHeadRichardsJLeverettAni method) (proteus.TransportCoefficients.ConservativeHeadRichardsL2projMualemVanGenuchten method) (proteus.TransportCoefficients.ConservativeHeadRichardsL2projMualemVanGenuchtenBlockHet method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchten method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHet method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2 method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2withUpwind method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenHet method) (proteus.TransportCoefficients.ConservativeSatRichardsMualemVanGenuchten method) (proteus.TransportCoefficients.ConservativeTotalHeadRichardsMualemVanGenuchten method) (proteus.TransportCoefficients.ConstantVelocityLevelSet method) (proteus.TransportCoefficients.DiffusiveWave_1D method) (proteus.TransportCoefficients.DiffusiveWave_2D method) (proteus.TransportCoefficients.DiscreteLaplaceOperator method) (proteus.TransportCoefficients.DiscreteMassMatrix method) (proteus.TransportCoefficients.DiscreteTwoPhaseAdvectionOperator method) (proteus.TransportCoefficients.EikonalEquationCoefficients method) (proteus.TransportCoefficients.GroundwaterBiodegradation01Coefficients method) (proteus.TransportCoefficients.GroundwaterBryantDawsonIonExCoefficients method) (proteus.TransportCoefficients.GroundwaterTransportCoefficients method) (proteus.TransportCoefficients.kEpsilon method) (proteus.TransportCoefficients.kEpsilon_epsilon method) (proteus.TransportCoefficients.kEpsilon_k method) (proteus.TransportCoefficients.LevelSetConservation method) (proteus.TransportCoefficients.LevelSetCurvatureCoefficients method) (proteus.TransportCoefficients.LevelSetNormalCoefficients method) (proteus.TransportCoefficients.LinearElasticity method) (proteus.TransportCoefficients.LinearVADR_ConstantCoefficients method) (proteus.TransportCoefficients.LinearVADR_ConstantCoefficients_full method) (proteus.TransportCoefficients.LinearVADR_ConstantCoefficients_lower method) (proteus.TransportCoefficients.LinearVADR_ConstantCoefficients_skew method) (proteus.TransportCoefficients.LinearVADR_ConstantCoefficients_upper method) (proteus.TransportCoefficients.MovingMesh method) (proteus.TransportCoefficients.NavierStokes method) (proteus.TransportCoefficients.NCLevelSetCoefficients method) (proteus.TransportCoefficients.NonlinearVADR_pqrst method) (proteus.TransportCoefficients.NonlinearVADR_pqrst_full method) (proteus.TransportCoefficients.PoissonEquationCoefficients method) (proteus.TransportCoefficients.RedistanceLevelSet method) (proteus.TransportCoefficients.RedistanceLevelSetSandF method) (proteus.TransportCoefficients.RedistanceLevelSetWithWeakPenalty method) (proteus.TransportCoefficients.ReynoldsAveragedNavierStokes_kEpsilon method) (proteus.TransportCoefficients.RotatingVelocityLevelSet method) (proteus.TransportCoefficients.SeepageBrezis method) (proteus.TransportCoefficients.ShallowWater method) (proteus.TransportCoefficients.Stokes method) (proteus.TransportCoefficients.StokesP method) (proteus.TransportCoefficients.TC_base method) (proteus.TransportCoefficients.ThreephaseNavierStokes_ST_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_ST_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_VOF_SO method) (proteus.TransportCoefficients.TwophaseReynoldsAveragedNavierStokes_AlgebraicClosure method) (proteus.TransportCoefficients.TwophaseStokes_LS_SO method) (proteus.TransportCoefficients.TwophaseStokes_VOF_SO method) (proteus.TransportCoefficients.UnitCubeRotation method) (proteus.TransportCoefficients.UnitSquareRotation method) (proteus.TransportCoefficients.UnitSquareVortexLevelSet method) (proteus.TransportCoefficients.ViscousBurgersEqn method) (proteus.TransportCoefficients.VOFCoefficients method) (proteus.TransportCoefficients.VolumeAveragedNavierStokesFullDevStress method) (proteus.TransportCoefficients.VolumeAveragedTwophaseNavierStokes method) (proteus.TransportCoefficients.VolumeAveragedVOFCoefficients method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcy_fc method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcy_split_pressure method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcy_split_saturation method)

evaluateBuckleyLeverettLiuExample() (proteus.TransportCoefficients.BuckleyLeverettLiuExample method) evaluateElementVelocityField() (proteus.PostProcessingTools.AggregateVelocityPostProcessor method) (proteus.PostProcessingTools.VelocityPostProcessingAlgorithmBase method) (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_DG_BDM method) (proteus.PostProcessingTools.VPP_DG_RT0 method) (proteus.PostProcessingTools.VPP_LOW_K_IB_PWL_RT0 method) (proteus.PostProcessingTools.VPP_P1nc_RT0 method) (proteus.PostProcessingTools.VPP_POINT_EVAL method) (proteus.PostProcessingTools.VPP_POINT_EVAL_GWVD method) (proteus.PostProcessingTools.VPP_PWC_RT0 method) (proteus.PostProcessingTools.VPP_PWL_BDM method) (proteus.PostProcessingTools.VPP_PWL_BDM2 method) (proteus.PostProcessingTools.VPP_PWL_BDM_OPT method) (proteus.PostProcessingTools.VPP_PWL_RT0 method) (proteus.PostProcessingTools.VPP_PWL_RT0_OPT method) (proteus.PostProcessingTools.VPP_PWL_RT1 method) (proteus.PostProcessingTools.VPP_SUN_GS_RT0 method) (proteus.PostProcessingTools.VPP_SUN_RT0 method) evaluateFunAtNodes() (proteus.mprans.MoveMeshMonitor.Coefficients method) evaluateFunAtQuadraturePoints() (proteus.mprans.MoveMeshMonitor.Coefficients method) evaluateFunAtX() (proteus.mprans.MoveMeshMonitor.Coefficients method) evaluateHeterogeneity_element() (proteus.SubsurfaceTransportCoefficients.SinglePhaseDarcyCoefficients method) evaluateHeterogeneity_elementBoundary() (proteus.SubsurfaceTransportCoefficients.SinglePhaseDarcyCoefficients method) evaluateHeterogeneity_exteriorElementBoundary() (proteus.SubsurfaceTransportCoefficients.SinglePhaseDarcyCoefficients method) evaluateHeterogeneity_globalElementBoundary() (proteus.SubsurfaceTransportCoefficients.SinglePhaseDarcyCoefficients method) evaluateLocalVelocityRepresentation() (proteus.PostProcessingTools.VPP_DG_BDM method) (proteus.PostProcessingTools.VPP_DG_RT0 method) (proteus.PostProcessingTools.VPP_LOW_K_IB_PWL_RT0 method) (proteus.PostProcessingTools.VPP_PWC_RT0 method) (proteus.PostProcessingTools.VPP_PWL_BDM method) (proteus.PostProcessingTools.VPP_PWL_BDM2 method) (proteus.PostProcessingTools.VPP_PWL_BDM_OPT method) (proteus.PostProcessingTools.VPP_PWL_RT0 method) (proteus.PostProcessingTools.VPP_PWL_RT1 method) (proteus.PostProcessingTools.VPP_SUN_GS_RT0 method) (proteus.PostProcessingTools.VPP_SUN_RT0 method) evaluatePressure() (proteus.mprans.Pres.Coefficients method) evaluatePresureIncrement() (proteus.mprans.PresInc.Coefficients method) evaluateVelocity() (proteus.SubsurfaceTransportCoefficients.GroundwaterTransportCoefficients method) (proteus.SubsurfaceTransportCoefficients.MultiphaseGroundwaterTransportCoefficients method) EVec() (in module proteus.EGeometry) EVERY_MODEL_STEP (proteus.Archiver.ArchiveFlags attribute) EVERY_SEQUENCE_STEP (proteus.Archiver.ArchiveFlags attribute) EVERY_USER_STEP (proteus.Archiver.ArchiveFlags attribute) ExplicitConsistentMassMatrixForVOF (class in proteus.NonlinearSolvers) ExplicitConsistentMassMatrixShallowWaterEquationsSolver (class in proteus.NonlinearSolvers) ExplicitConsistentMassMatrixWithRedistancing (class in proteus.NonlinearSolvers) ExplicitLumpedMassMatrix (class in proteus.NonlinearSolvers) ExplicitLumpedMassMatrixShallowWaterEquationsSolver (class in proteus.NonlinearSolvers) ExplicitRK_base (class in proteus.TimeIntegration) external_forces_from_ns (proteus.mbd.CouplingFSI.ProtChMoorings attribute) external_forces_manual (proteus.mbd.CouplingFSI.ProtChMoorings attribute) extract_sub_matrix_csr() (in module proteus.deim_utils) extractPropertiesFromXdmfGridNode() (in module proteus.MeshTools) extractVelocity() (proteus.mprans.BoundaryConditions.WallFunctions method) extrude2Dto3D() (in module proteus.SpatialTools)

F

F (proteus.mbd.CouplingFSI.ProtChBody attribute) F_Aij (proteus.mbd.CouplingFSI.ProtChBody attribute) F_Aij_last (proteus.mbd.CouplingFSI.ProtChBody attribute) F_applied (proteus.mbd.CouplingFSI.ProtChBody attribute) F_applied_last (proteus.mbd.CouplingFSI.ProtChBody attribute) F_last (proteus.mbd.CouplingFSI.ProtChBody attribute) F_prot (proteus.mbd.CouplingFSI.ProtChBody attribute) F_prot_last (proteus.mbd.CouplingFSI.ProtChBody attribute) FaceBarycenterEdge (class in proteus.Quadrature) FaceBarycenterInterpolationConditions (class in proteus.FemTools) FaceBarycenterTetrahedron (class in proteus.Quadrature) FaceBarycenterTriangle (class in proteus.Quadrature) fact() (in module proteus.RefUtils) factorial() (proteus.FemTools.BernsteinOnCube method) factorLocalBDM1projectionMatrices() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_DG_BDM method) (proteus.PostProcessingTools.VPP_PWL_BDM method) (proteus.PostProcessingTools.VPP_PWL_BDM_OPT method) factorLocalBDM2projectionMatrices() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) failed() (proteus.LinearSolvers.KSP_petsc4py method) (proteus.LinearSolvers.LinearSolver method) (proteus.NonlinearSolvers.NonlinearSolver method) FAS (class in proteus.NonlinearSolvers) fastcos_test() (in module proteus.WaveTools) fastcosh_test() (in module proteus.WaveTools) fastsinh_test() (in module proteus.WaveTools) FasTwoLevel (class in proteus.NonlinearSolvers) FCTStep() (proteus.mprans.CLSVOF.LevelModel method) (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) (proteus.mprans.VOF.LevelModel method) (proteus.mprans.VOF3P.LevelModel method) (proteus.mprans.VOS3P.LevelModel method) femSpace (proteus.FemTools.FiniteElementFunction attribute) femSpaces (in module proteus.default_n) FEMTools (class in proteus.mprans.beamFEM) FESpace (class in proteus.SWFlow.SWFlowProblem) (class in proteus.TwoPhaseFlow.TwoPhaseFlowProblem) fetchIndex() (proteus.TwoPhaseFlow.utils.Parameters.ParametersModelBase method) FFDarcyFC_ASGS (class in proteus.SubgridError) fi (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) fim (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) finalize() (proteus.MeshTools.EdgeMesh method) (proteus.MeshTools.HexahedralMesh method) (proteus.MeshTools.QuadrilateralMesh method) (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method) finalizeStep() (in module proteus.default_p) finalizeStepDummy() (in module proteus.default_p) finalizeViewSolution() (proteus.NumericalSolution.NS_base method) findElementContainingCoords() (proteus.mprans.BoundaryConditions.WallFunctions method)

findElementContainingCoordsDist() (proteus.mbd.CouplingFSI.ProtChSystem method) findElementContainingCoordsKD() (proteus.mbd.CouplingFSI.ProtChSystem method) findNearestNode() (proteus.Gauges.Gauges method) findWindow() (proteus.WaveTools.TimeSeries method) findXMLgridElement() (in module proteus.MeshTools) FiniteElementFunction (class in proteus.FemTools) first_step (proteus.mbd.CouplingFSI.ProtChSystem attribute) fixBackNode() (proteus.mbd.CouplingFSI.ProtChMoorings method) FixedStep (in module proteus.StepControl) fixFrontNode() (proteus.mbd.CouplingFSI.ProtChMoorings method) fixLocalNumbering() (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method) flagNeumannBoundaryEdges() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) FLCBDF (class in proteus.TimeIntegration) FLCBDF_controller (class in proteus.StepControl) FLCBDF_controller_sys (class in proteus.StepControl) FLCBDF_TwophaseDarcy_fc (class in proteus.TimeIntegration) fluid_acceleration_array (proteus.mbd.CouplingFSI.ProtChMoorings attribute) fluid_density_array (proteus.mbd.CouplingFSI.ProtChMoorings attribute) fluid_velocity_array (proteus.mbd.CouplingFSI.ProtChMoorings attribute) fluid_velocity_array_previous (proteus.mbd.CouplingFSI.ProtChMoorings attribute) fluid_velocity_function (proteus.mbd.CouplingFSI.ProtChMoorings attribute) FluxBoundaryConditions (class in proteus.FemTools) fluxBoundaryConditions (in module proteus.default_p) FluxBoundaryConditionsGlobalElementBoundaries (class in proteus.FemTools) fluxDomainBoundaryIntegral() (in module proteus.Norms) fluxDomainBoundaryIntegralFromVector() (in module proteus.Norms) fminbound (class in proteus.Optimizers) fmod() (proteus.FemTools.QuadraticLagrangeCubeNodalInterpolationConditions method) (proteus.FemTools.QuadraticLagrangeNodalInterpolationConditions method) focus (proteus.WaveTools.NewWave attribute) fOfUT() (proteus.AnalyticalSolutions.NonlinearDAE method) forward_euler() (in module proteus.mprans.BodyDynamics) ForwardEuler (class in proteus.TimeIntegration) ForwardEuler_A (class in proteus.TimeIntegration) ForwardEuler_H (class in proteus.TimeIntegration) ForwardIntegrator (class in proteus.TimeIntegration) fp (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) FreezableClass (class in proteus.TwoPhaseFlow.utils.Parameters) friction_module() (proteus.mprans.BodyDynamics.CaissonBody method) front_body (proteus.mbd.CouplingFSI.ProtChMoorings attribute) fullNewtonFlag (in module proteus.default_n) fullNewtonOff() (proteus.NonlinearSolvers.FasTwoLevel method) (proteus.NonlinearSolvers.NonlinearSolver method) fullNewtonOn() (proteus.NonlinearSolvers.FasTwoLevel method) (proteus.NonlinearSolvers.NonlinearSolver method) fullResidualOff() (proteus.NonlinearSolvers.FasTwoLevel method) (proteus.NonlinearSolvers.NonlinearSolver method) fullResidualOn() (proteus.NonlinearSolvers.FasTwoLevel method) (proteus.NonlinearSolvers.NonlinearSolver method) FullyCoupledMualemVanGenuchten (class in proteus.SubsurfaceTransportCoefficients) FullyCoupledPressurePressureMualemVanGenuchten (class in proteus.SubsurfaceTransportCoefficients) FullyCoupledPressurePressureSimplePSKs (class in proteus.SubsurfaceTransportCoefficients) FullyCoupledSimplePSKs (class in proteus.SubsurfaceTransportCoefficients)

G

g (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) gAbs (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) gatherAndWriteTimes() (proteus.Archiver.AR_base method) GatherDOF (class in proteus.AuxiliaryVariables) Gauges (class in proteus.Gauges) GaussEdge (class in proteus.Quadrature) GaussPoint (class in proteus.Quadrature) GaussQuad() (proteus.mprans.beamFEM.FEMTools method) GaussSeidel (class in proteus.LinearSolvers) GaussTetrahedron (class in proteus.Quadrature) GaussTriangle (class in proteus.Quadrature) generate_svd_decomposition() (in module proteus.deim_utils) generateAplot() (proteus.AnalyticalSolutions.Buckley_Leverett_RiemannSoln method) generateEdgeMeshFromRectangularGrid() (in module proteus.cmeshTools) (proteus.MeshTools.EdgeMesh method) generateFrom2DMFile() (in module proteus.cmeshTools) (proteus.MeshTools.TriangularMesh method) generateFrom3DMFile() (in module proteus.cmeshTools) (proteus.MeshTools.TetrahedralMesh method) generateFromExistingCoarseMesh() (proteus.MeshTools.MultilevelHexahedralMesh method) (proteus.MeshTools.MultilevelNURBSMesh method) (proteus.MeshTools.MultilevelTetrahedralMesh method) (proteus.MeshTools.MultilevelTriangularMesh method) generateFromHexFile() (in module proteus.cmeshTools) (proteus.MeshTools.HexahedralMesh method) generateFromQuadFileIFISS() (proteus.MeshTools.QuadrilateralMesh method) generateFromTetgenFiles() (in module proteus.cmeshTools) (proteus.MeshTools.TetrahedralMesh method) generateFromTetgenFilesParallel() (in module proteus.cmeshTools) generateFromTriangleFiles() (in module proteus.cmeshTools) (proteus.MeshTools.TriangularMesh method) generateFromTriangleMesh() (proteus.MeshTools.TriangularMesh method) generateHexahedralMeshFromRectangularGrid() (in module proteus.cmeshTools) (proteus.MeshTools.HexahedralMesh method) (proteus.MeshTools.NURBSMesh method) generateMesh() (in module proteus.MeshTools) generateNURBSMeshFromRectangularGrid() (proteus.MeshTools.NURBSMesh method) generateParentInfo() (in module proteus.SimTools) generatePartitionedMeshFromPUMI() (proteus.MeshTools.MultilevelTetrahedralMesh method) (proteus.MeshTools.MultilevelTriangularMesh method) generatePartitionedMeshFromTetgenFiles() (proteus.MeshTools.MultilevelTetrahedralMesh method) generatePartitionedMeshFromTriangleFiles() (proteus.MeshTools.MultilevelTriangularMesh method) generateQuadrilateralMeshFromRectangularGrid() (in module proteus.cmeshTools) (proteus.MeshTools.QuadrilateralMesh method) generateSpatialConvTable() (proteus.LatexReport.LatexResultsSummary method) generateSplineTables() (proteus.SubsurfaceTransportCoefficients.TwophaseDarcyFlow_base method) generateSubsteps() (proteus.mprans.GN_SW2DCV.RKEV method) (proteus.mprans.NCLS.RKEV method) (proteus.mprans.SW2DCV.RKEV method) (proteus.mprans.VOF.RKEV method) (proteus.mprans.VOF3P.RKEV method) (proteus.mprans.VOS3P.RKEV method) (proteus.TimeIntegration.ExplicitRK_base method) (proteus.TimeIntegration.TI_base method) generateTetrahedralMeshFromRectangularGrid() (in module proteus.cmeshTools) (proteus.MeshTools.TetrahedralMesh method) generateTriangularMeshFromRectangularGrid() (in module proteus.cmeshTools) (proteus.MeshTools.TriangularMesh method) genMesh (in module proteus.default_p) genMeshWithTetgen() (in module proteus.MeshTools) genMeshWithTriangle() (in module proteus.MeshTools) get() (in module proteus.Comm) (in module proteus.Context) get_8_sub_simplex() (proteus.Quadrature.CompositeTetrahedron method) get_detJ_and_J_from_ref() (proteus.Quadrature.CompositeTetrahedron method) get_dissipation_dirichlet() (proteus.mprans.BoundaryConditions.WallFunctions method) get_dof_order_class() (proteus.LinearSolvers.ModelInfo method) get_dof_order_type() (proteus.LinearSolvers.ModelInfo method) get_global_ksp() (proteus.LinearSolvers.SolverNullSpace method) get_h_of_Tetrahedron() (proteus.Quadrature.CompositeTetrahedron method) get_k_dirichlet() (proteus.mprans.BoundaryConditions.WallFunctions method) get_max_h_of_all_tetrahedron() (proteus.Quadrature.CompositeTetrahedron method) get_model_info() (proteus.LinearSolvers.DofOrderInfo method) get_name() (proteus.LinearSolvers.ConstantNullSpace static method) (proteus.LinearSolvers.NavierStokesConstantPressure static method) (proteus.LinearSolvers.SolverNullSpace static method) get_num_components() (proteus.LinearSolvers.ModelInfo method) (proteus.LinearSolvers.SchurPrecon method) get_num_sigmaBasisElements() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) get_sub_tet_of_all_tet() (proteus.Quadrature.CompositeTetrahedron method) get_time() (proteus.Gauges.Gauges method) get_u_diffusive() (proteus.mprans.BoundaryConditions.WallFunctions method) get_u_dirichlet() (proteus.mprans.BoundaryConditions.WallFunctions method) get_unit_vector() (in module proteus.mprans.SpatialTools) get_v_diffusive() (proteus.mprans.BoundaryConditions.WallFunctions method) get_v_dirichlet() (proteus.mprans.BoundaryConditions.WallFunctions method) get_velocity_var_names() (proteus.LinearSolvers.SchurPrecon method) get_w_diffusive() (proteus.mprans.BoundaryConditions.WallFunctions method) get_w_dirichlet() (proteus.mprans.BoundaryConditions.WallFunctions method) getAcceleration() (proteus.mprans.BodyDynamics.RigidBody method) getAddedMassForces() (proteus.mbd.CouplingFSI.ProtChMoorings method) getAdvectiveFluxOfXT() (proteus.AnalyticalSolutions.AS_base method) getAngularAcceleration() (proteus.mprans.BodyDynamics.RigidBody method) getAngularDisplacement() (proteus.mprans.BodyDynamics.RigidBody method) getAreaValue() (proteus.mprans.MoveMeshMonitor.Coefficients method) getAverageFlux() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) getBasisGradientValues() (proteus.FemTools.ParametricFiniteElementSpace method) getBasisGradientValuesAtArray() (proteus.FemTools.ParametricFiniteElementSpace method) getBasisGradientValuesGlobalExteriorTrace() (proteus.FemTools.ParametricFiniteElementSpace method) getBasisGradientValuesGlobalExteriorTraceAtArray() (proteus.FemTools.ParametricFiniteElementSpace method) getBasisGradientValuesRef() (proteus.FemTools.ElementMaps method) (proteus.FemTools.ParametricFiniteElementSpace method) (proteus.FemTools.ParametricMaps method) getBasisGradientValuesTrace() (proteus.FemTools.ParametricFiniteElementSpace method) getBasisGradientValuesTraceAtArray() (proteus.FemTools.ParametricFiniteElementSpace method) getBasisGradientValuesTraceRef() (proteus.FemTools.ElementMaps method) (proteus.FemTools.ParametricFiniteElementSpace method) (proteus.FemTools.ParametricMaps method) getBasisHessianValues() (proteus.FemTools.ParametricFiniteElementSpace method) getBasisHessianValuesRef() (proteus.FemTools.ParametricFiniteElementSpace method) getBasisValues() (proteus.FemTools.ParametricFiniteElementSpace method) getBasisValuesAtArray() (proteus.FemTools.ParametricFiniteElementSpace method) getBasisValuesGlobalExteriorTrace() (proteus.FemTools.ParametricFiniteElementSpace method) getBasisValuesGlobalExteriorTraceAtArray() (proteus.FemTools.ParametricFiniteElementSpace method) getBasisValuesIP() (proteus.FemTools.ParametricMaps method) getBasisValuesRef() (proteus.FemTools.ElementMaps method) (proteus.FemTools.ParametricFiniteElementSpace method) (proteus.FemTools.ParametricMaps method) getBasisValuesTrace() (proteus.FemTools.ParametricFiniteElementSpace method) getBasisValuesTraceAtArray() (proteus.FemTools.ParametricFiniteElementSpace method) getBasisValuesTraceRef() (proteus.FemTools.ElementMaps method) (proteus.FemTools.ParametricFiniteElementSpace method) (proteus.FemTools.ParametricMaps method) getBoundingBox() (proteus.Domain.D_base method) getChronoObject() (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.mbd.CouplingFSI.ProtChMesh method) (proteus.mbd.CouplingFSI.ProtChSystem method) getCMatrices() (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) getColor() (proteus.MeshTools.RectangularGrid method) getConservationJacobianPWL() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_LOW_K_IB_PWL_RT0 method) (proteus.PostProcessingTools.VPP_PWL_RT0 method) (proteus.PostProcessingTools.VPP_PWL_RT0_OPT method) (proteus.PostProcessingTools.VPP_PWL_RT1 method) getConservationJacobianPWL_opt() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) getConservationResidualPWL() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_LOW_K_IB_PWL_RT0 method) (proteus.PostProcessingTools.VPP_PWL_RT0 method) (proteus.PostProcessingTools.VPP_PWL_RT0_OPT method) (proteus.PostProcessingTools.VPP_PWL_RT1 method) getConservationResidualPWL_opt() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) getContext() (proteus.BoundaryConditions.BC_Base method) getCoords_at_Quad() (proteus.mprans.beamFEM.FEMTools method) getCoords_Qs_at_Quad() (proteus.mprans.beamFEM.FEMTools method) getDiffusiveFluxOfX() (proteus.AnalyticalSolutions.AS_base method) getDisplacement() (proteus.mprans.BodyDynamics.RigidBody method) getDOFsCoord() (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) getDragForces() (proteus.mbd.CouplingFSI.ProtChMoorings method) getDROfUX() (proteus.AnalyticalSolutions.AS_base method) getDUOfXT() (proteus.AnalyticalSolutions.AS_base method) getDynamicSDF() (proteus.mbd.CouplingFSI.ProtChBody method) getEdgesFromPolygons() (in module proteus.MeshTools) getElementBDM1velocityValuesLagrangeRep() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_DG_BDM method) (proteus.PostProcessingTools.VPP_PWL_BDM method) (proteus.PostProcessingTools.VPP_PWL_BDM_OPT method) getElementBDM2velocityValuesLagrangeRep() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) getElementBoundaryRT0velocityValues() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_P1nc_RT0 method) getElementLDGvelocityValuesLagrangeRep() (proteus.PostProcessingTools.VPP_POINT_EVAL_GWVD method) getElementRT0velocityValues() (proteus.AuxiliaryVariables.PT123velocityGenerator method) (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_P1nc_RT0 method) getElementwiseFlux() (proteus.PostProcessingTools.VelocityPostProcessingAlgorithmBase method) getErgunDrag() (in module proteus.mprans.RANS2P) getEulerAngles() (in module proteus.mprans.BodyDynamics) getFEMvals() (in module proteus.DiagUtils) getFESpace() (proteus.SWFlow.SWFlowProblem.FESpace method) getFluidKappaLocalCoords() (proteus.mprans.BoundaryConditions.kWall method) getFluidVelocityGradientLocalCoords() (proteus.mbd.CouplingFSI.ProtChSystem method) getFluidVelocityLocalCoords() (proteus.mbd.CouplingFSI.ProtChSystem method) (proteus.mprans.BoundaryConditions.WallFunctions method) getFlux() (proteus.ObjectiveFunctions.BuckleyLeverett method) getForce() (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.SW2D.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) getGlobalElementBoundaryRT0velocityValues() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_P1nc_RT0 method) getGmshPhysicalGroups() (in module proteus.Domain) (in module proteus.SpatialTools) getGradientTensorValues() (proteus.FemTools.FiniteElementFunction method) getGradientValue() (proteus.mprans.MoveMeshMonitor.Coefficients method) getGradientValues() (proteus.FemTools.FiniteElementFunction method) getGradientValuesGlobalExteriorTrace() (proteus.FemTools.FiniteElementFunction method) getGradientValuesTrace() (proteus.FemTools.FiniteElementFunction method) getGravitationalAcceleration() (proteus.mbd.CouplingFSI.ProtChSystem method) getGravityForce() (proteus.mprans.BodyDynamics.RigidBody method) getHessianValues() (proteus.FemTools.FiniteElementFunction method) getHexahedron() (proteus.MeshTools.RectangularGrid method) getHexahedronNumber() (proteus.MeshTools.RectangularGrid method) getICDofs() (proteus.mprans.RDLS.Coefficients method) (proteus.TransportCoefficients.RedistanceLevelSet method) getInertia() (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.mprans.BodyDynamics.CaissonBody method) (proteus.mprans.BodyDynamics.RigidBody method) getInfoFromSTL() (in module proteus.SpatialTools) getIntegrationPointsOnCoarseGrid() (in module proteus.SimTools) getInteriorDivFreeElement() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) getInteriorTestGradients() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) getInverseValue() (proteus.FemTools.AffineMaps method) (proteus.FemTools.ElementMaps method) getInverseValues() (proteus.FemTools.AffineMaps method) (proteus.FemTools.ElementMaps method) getInverseValuesGlobalExteriorTrace() (proteus.FemTools.AffineMaps method) getInverseValuesTrace() (proteus.FemTools.AffineMaps method)

getJacobian() (proteus.ADR.LevelModel method) (proteus.elastoplastic.ElastoPlastic.LevelModel method) (proteus.mprans.AddedMass.LevelModel method) (proteus.mprans.CLSVOF.LevelModel method) (proteus.mprans.Dissipation.LevelModel method) (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.Kappa.LevelModel method) (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) (proteus.mprans.MoveMesh.LevelModel method) (proteus.mprans.NCLS.LevelModel method) (proteus.mprans.NCLS3P.LevelModel method) (proteus.mprans.Pres.LevelModel method) (proteus.mprans.PresInc.LevelModel method) (proteus.mprans.PresInit.LevelModel method) (proteus.mprans.RANS2P.LevelModel method) (proteus.mprans.RANS2P_IB.LevelModel method) (proteus.mprans.RANS3PF.LevelModel method) (proteus.mprans.RANS3PSed.LevelModel method) (proteus.mprans.RDLS.LevelModel method) (proteus.mprans.SW2D.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) (proteus.mprans.VOF.LevelModel method) (proteus.mprans.VOF3P.LevelModel method) (proteus.mprans.VOS3P.LevelModel method) (proteus.NonlinearSolvers.NonlinearEquation method) (proteus.richards.Richards.LevelModel method) (proteus.Transport.OneLevelTransport method) getJacobian_CSR() (proteus.Transport.OneLevelTransport method) getJacobian_dense() (proteus.Transport.OneLevelTransport method) getJacobianNew() (proteus.mprans.RDLS.LevelModel method) getJacobianValues() (proteus.FemTools.ElementMaps method) (proteus.FemTools.ParametricMaps method) getJacobianValuesGlobalExteriorTrace() (proteus.FemTools.ElementMaps method) (proteus.FemTools.ParametricMaps method) getJacobianValuesGlobalExteriorTrace_movingDomain() (proteus.FemTools.ElementMaps method) (proteus.FemTools.ParametricMaps method) getJacobianValuesTrace() (proteus.FemTools.ElementMaps method) (proteus.FemTools.ParametricMaps method) getJacobianValuesTrace_movingDomain() (proteus.FemTools.ElementMaps method) (proteus.FemTools.ParametricMaps method) getKappa() (proteus.mprans.BoundaryConditions.kWall method) getLevelSetValue() (proteus.mprans.MoveMeshMonitor.Coefficients method) getLoadVector() (proteus.Transport.OneLevelTransport method) getLocalElement() (proteus.Gauges.Gauges method) (proteus.mprans.BoundaryConditions.WallFunctions method) getLocalNearestNode() (proteus.Gauges.Gauges method) (proteus.mprans.BoundaryConditions.WallFunctions method) getLumpedMassMatrix() (proteus.mprans.CLSVOF.LevelModel method) getMass() (proteus.mbd.CouplingFSI.ProtChBody method) getMassJacobian() (proteus.Transport.OneLevelTransport method) getMassMatrix() (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.VOF.LevelModel method) (proteus.mprans.VOF3P.LevelModel method) getMassResidual() (proteus.Transport.OneLevelTransport method) getMesh2ModelClassification() (proteus.Domain.D_base method) getMeshIntersections() (in module proteus.MeshTools) (proteus.Gauges.Gauges method) getMetricsAtEOS() (proteus.mprans.CLSVOF.LevelModel method) (proteus.mprans.RDLS.LevelModel method) getMetricsAtETS() (proteus.mprans.CLSVOF.LevelModel method) getModels() (proteus.MeshAdaptPUMI.AdaptHelper.PUMI_helper method) getMoments() (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.mprans.BodyDynamics.RigidBody method) getNode() (proteus.MeshTools.RectangularGrid method) getNodeNumber() (proteus.MeshTools.RectangularGrid method) getNodesAcceleration() (proteus.mbd.CouplingFSI.ProtChMoorings method) getNodesD() (proteus.mbd.CouplingFSI.ProtChMoorings method) getNodesFromEdges() (in module proteus.MeshTools) getNodesPosition() (proteus.mbd.CouplingFSI.ProtChMoorings method) getNodesTension() (proteus.mbd.CouplingFSI.ProtChMoorings method) getNodesVelocity() (proteus.mbd.CouplingFSI.ProtChMoorings method) getNormalReconstruction() (proteus.mprans.CLSVOF.LevelModel method) (proteus.mprans.RDLS.LevelModel method) (proteus.NonlinearSolvers.CLSVOFNewton method) getOutputStepping() (proteus.SWFlow.SWFlowProblem.OutputStepping method) getPermutations() (proteus.FemTools.ParametricMaps method) getPosition() (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.SpatialTools.Shape method) getPressureForces() (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.mprans.BodyDynamics.RigidBody method) getQp() (proteus.LinearSolvers.SchurOperatorConstructor method) getQuadraturePhysPointsAndWeights() (in module proteus.DiagUtils) getQv() (proteus.LinearSolvers.SchurOperatorConstructor method) getRedistancingResidual() (proteus.mprans.NCLS.LevelModel method) getResidual() (proteus.ADR.LevelModel method) (proteus.elastoplastic.ElastoPlastic.LevelModel method) (proteus.mprans.AddedMass.LevelModel method) (proteus.mprans.CLSVOF.LevelModel method) (proteus.mprans.Dissipation.LevelModel method) (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.Kappa.LevelModel method) (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) (proteus.mprans.MoveMesh.LevelModel method) (proteus.mprans.NCLS.LevelModel method) (proteus.mprans.NCLS3P.LevelModel method) (proteus.mprans.Pres.LevelModel method) (proteus.mprans.PresInc.LevelModel method) (proteus.mprans.PresInit.LevelModel method) (proteus.mprans.RANS2P.LevelModel method) (proteus.mprans.RANS2P_IB.LevelModel method) (proteus.mprans.RANS3PF.LevelModel method) (proteus.mprans.RANS3PSed.LevelModel method) (proteus.mprans.RDLS.LevelModel method) (proteus.mprans.SW2D.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) (proteus.mprans.VOF.LevelModel method) (proteus.mprans.VOF3P.LevelModel method) (proteus.mprans.VOS3P.LevelModel method) (proteus.NonlinearSolvers.NonlinearEquation method) (proteus.ObjectiveFunctions.SimpelFunc method) (proteus.ObjectiveFunctions.SimpelFunc2 method) (proteus.ObjectiveFunctions.SimpelFunc3 method) (proteus.Optimizers.ObjectiveFunction_base method) (proteus.richards.Richards.LevelModel method) (proteus.Transport.OneLevelTransport method) getRhsL2Proj() (proteus.mprans.CLSVOF.LevelModel method) getRhsSmoothing() (proteus.mprans.NCLS.LevelModel method) getROfUX() (proteus.AnalyticalSolutions.AS_base method) getRotation() (proteus.SpatialTools.Shape method) getRotationMatrix() (proteus.mbd.CouplingFSI.ProtChBody method) getScalarElementBoundaryStorageKeys() (proteus.SimTools.SimulationProcessor method) getScalarElementStorageKeys() (proteus.SimTools.SimulationProcessor method) getScalarExteriorElementBoundaryStorageKeys() (proteus.SimTools.SimulationProcessor method) getSegmentPartition() (proteus.Domain.PlanarStraightLineGraphDomain method) getShearForces() (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.mprans.BodyDynamics.RigidBody method) getSize() (proteus.LinearAlgebraTools.InvOperatorShell method) (proteus.LinearAlgebraTools.OperatorShell method) (proteus.LinearAlgebraTools.TwoPhase_PCDInv_shell method) getSmoothingMatrix() (proteus.mprans.NCLS.LevelModel method) getSparsityPatternForComponents() (proteus.mprans.RANS3PF.LevelModel method) getSpatialJacobian() (proteus.Transport.OneLevelTransport method) getSpatialResidual() (proteus.Transport.OneLevelTransport method) getStiffnessMatrix() (proteus.mprans.MCorr3P.LevelModel method) getTensionBack() (proteus.mbd.CouplingFSI.ProtChMoorings method) getTensionElement() (proteus.mbd.CouplingFSI.ProtChMoorings method) getTensionFront() (proteus.mbd.CouplingFSI.ProtChMoorings method) getTensorElementBoundaryStorageKeys() (proteus.SimTools.SimulationProcessor method) getTensorElementStorageKeys() (proteus.SimTools.SimulationProcessor method) getTensorExteriorElementBoundaryStorageKeys() (proteus.SimTools.SimulationProcessor method) getTotalFluxOfX() (proteus.AnalyticalSolutions.AS_base method) getTotalForces() (proteus.mprans.BodyDynamics.RigidBody method) getTotalMoments() (proteus.mprans.BodyDynamics.RigidBody method) getTriangleMeshInfo() (proteus.mbd.CouplingFSI.ProtChBody method) getUOfXT() (proteus.AnalyticalSolutions.AS_base method) getValue() (proteus.FemTools.FiniteElementFunction method) (proteus.InputTranslators.ADH_metfile method) getValues() (proteus.FemTools.ElementMaps method) (proteus.FemTools.FiniteElementFunction method) (proteus.FemTools.ParametricMaps method) (proteus.mbd.CouplingFSI.ProtChBody method) getValuesAtMeshNodes() (proteus.FemTools.C0_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffineP0_OnSimplexWithMonomialBasis method) (proteus.FemTools.DG_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_Constants method) (proteus.FemTools.NC_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.ParametricFiniteElementSpace method) getValuesGlobalExteriorTrace() (proteus.FemTools.ElementMaps method) (proteus.FemTools.FiniteElementFunction method) (proteus.FemTools.ParametricMaps method) getValuesTrace() (proteus.FemTools.ElementMaps method) (proteus.FemTools.FiniteElementFunction method) (proteus.FemTools.ParametricMaps method) getVariables() (proteus.mprans.BoundaryConditions.WallFunctions method) getVectorElementBoundaryStorageKeys() (proteus.SimTools.SimulationProcessor method) getVectorElementStorageKeys() (proteus.SimTools.SimulationProcessor method) getVectorExteriorElementBoundaryStorageKeys() (proteus.SimTools.SimulationProcessor method) getVelocity() (proteus.mbd.CouplingFSI.ProtChBody method) getXEdge() (proteus.MeshTools.RectangularGrid method) getXEdgeNumber() (proteus.MeshTools.RectangularGrid method) getXYQuadrilateral() (proteus.MeshTools.RectangularGrid method) getXYQuadrilateralNumber() (proteus.MeshTools.RectangularGrid method) getXZQuadrilateral() (proteus.MeshTools.RectangularGrid method) getXZQuadrilateralNumber() (proteus.MeshTools.RectangularGrid method) getYEdge() (proteus.MeshTools.RectangularGrid method) getYEdgeNumber() (proteus.MeshTools.RectangularGrid method) getYZQuadrilateral() (proteus.MeshTools.RectangularGrid method) getYZQuadrilateralNumber() (proteus.MeshTools.RectangularGrid method) getZEdge() (proteus.MeshTools.RectangularGrid method) getZEdgeNumber() (proteus.MeshTools.RectangularGrid method) GF (class in proteus.InputTranslators) GlobalConstantNewton (class in proteus.mprans.MCorr) (class in proteus.mprans.MCorr3P) globalConstantRJ() (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) globalConstantSolve() (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) globalMax() (in module proteus.Comm) (proteus.Comm.Comm method) globalMin() (in module proteus.Comm) (proteus.Comm.Comm method) globalScalarDomainIntegral() (in module proteus.Norms) globalSum() (in module proteus.Comm) (proteus.Comm.Comm method) gmsh2proteus() (proteus.Domain.D_base method) GMSH_3D_Domain (class in proteus.Domain) gnuplotOn() (in module proteus.Viewers) GroundwaterBiodegradation01Coefficients (class in proteus.TransportCoefficients) groundwaterBiodegradation01EvaluateFC() (proteus.TransportCoefficients.GroundwaterBiodegradation01Coefficients method) GroundwaterBryantDawsonIonExCoefficients (class in proteus.TransportCoefficients) groundwaterBryantDawsonIonExEvaluateFC() (proteus.TransportCoefficients.GroundwaterBryantDawsonIonExCoefficients method) GroundwaterTransportCoefficients (class in proteus.SubsurfaceTransportCoefficients) (class in proteus.TransportCoefficients) groundwaterTransportCoefficientsEvaluate() (proteus.TransportCoefficients.GroundwaterTransportCoefficients method) groundwaterTransportCoefficientsEvaluate_hetMat() (proteus.SubsurfaceTransportCoefficients.GroundwaterTransportCoefficients method) GustafssonFullNewton_dt_controller (class in proteus.StepControl)

H

h_ang_predict (proteus.mbd.CouplingFSI.ProtChBody attribute) h_ang_predict_last (proteus.mbd.CouplingFSI.ProtChBody attribute) h_ang_vel_predict (proteus.mbd.CouplingFSI.ProtChBody attribute) h_ang_vel_predict_last (proteus.mbd.CouplingFSI.ProtChBody attribute) h_predict (proteus.mbd.CouplingFSI.ProtChBody attribute) h_predict_last (proteus.mbd.CouplingFSI.ProtChBody attribute) HamiltonJacobi_ASGS (class in proteus.SubgridError) HamiltonJacobi_ASGS_opt (class in proteus.SubgridError) HamiltonJacobi_DiagonalChengShu (class in proteus.NumericalFlux) HamiltonJacobi_DiagonalLesaintRaviart (class in proteus.NumericalFlux) HamiltonJacobi_DiagonalLesaintRaviart_Diffusion_IIPG (class in proteus.NumericalFlux) HamiltonJacobi_DiagonalLesaintRaviart_Diffusion_SIPG_exterior (class in proteus.NumericalFlux) HamiltonJacobi_Pressure_DiagonalLesaintRaviart_Diffusion_SIPG_exterior (class in proteus.NumericalFlux) HamiltonJacobi_SC (class in proteus.ShockCapturing) HamiltonJacobiDiffusionReaction_ASGS (class in proteus.SubgridError) HamiltonJacobiJaffre_SC (class in proteus.ShockCapturing) hasInterior (proteus.mprans.GN_SW2DCV.NumericalFlux attribute) (proteus.mprans.RANS2P.NumericalFlux attribute) (proteus.mprans.RANS3PF.NumericalFlux attribute) (proteus.mprans.RANS3PSed.NumericalFlux attribute) (proteus.mprans.SW2D.NumericalFlux attribute) (proteus.mprans.SW2DCV.NumericalFlux attribute) (proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_IIPG_exterior attribute) (proteus.NumericalFlux.Advection_DiagonalUpwind_exterior attribute) (proteus.NumericalFlux.Advection_DiagonalUpwind_IIPG_exterior attribute) (proteus.NumericalFlux.ConstantAdvection_Diffusion_IIPG_exterior attribute) (proteus.NumericalFlux.ConstantAdvection_exterior attribute) (proteus.NumericalFlux.Curvature_exterior attribute) (proteus.NumericalFlux.DarcyFC_IIPG_exterior attribute) (proteus.NumericalFlux.DarcyFCFF_IIPG_exterior attribute) (proteus.NumericalFlux.DarcyFCPP_IIPG_exterior attribute) (proteus.NumericalFlux.DarcySplitPressure_IIPG_exterior attribute) (proteus.NumericalFlux.Diffusion_IIPG_exterior attribute) (proteus.NumericalFlux.DoNothing attribute) (proteus.NumericalFlux.MixedDarcy_exterior attribute) (proteus.NumericalFlux.NavierStokes_Advection_DiagonalUpwind_Diffusion_IIPG_exterior attribute) (proteus.NumericalFlux.NavierStokes_Advection_DiagonalUpwind_Diffusion_SIPG_exterior attribute) (proteus.NumericalFlux.NF_base attribute) (proteus.NumericalFlux.Richards_IIPG_exterior attribute) (proteus.NumericalFlux.Richards_SIPG_exterior attribute) (proteus.NumericalFlux.Stokes_Advection_DiagonalUpwind_Diffusion_IIPG_exterior attribute) (proteus.NumericalFlux.StokesP_Advection_DiagonalUpwind_Diffusion_IIPG_exterior attribute) (proteus.NumericalFlux.Stress_IIPG_exterior attribute) (proteus.NumericalFlux.Stress_SIPG_exterior attribute) (proteus.NumericalFlux.StrongDirichlet attribute)

hdfFileName (proteus.mbd.CouplingFSI.ProtChBody attribute) (proteus.mbd.CouplingFSI.ProtChMoorings attribute) HeuristicNL_dt_controller (class in proteus.StepControl) HexahedralMesh (class in proteus.MeshTools) Hexahedron (class in proteus.MeshTools) hexahedronLocalBoundaryLookup (proteus.FemTools.CubeNodalInterpolationConditions attribute) HierarchicalMeshEstimator (class in proteus.ErrorEstimators) hotstartWithPUMI() (proteus.MeshAdaptPUMI.AdaptHelper.PUMI_helper method) Hs (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) hx() (proteus.mbd.CouplingFSI.ProtChBody method) hx_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) hx_rotation() (proteus.mbd.CouplingFSI.ProtChBody method) hx_translation() (proteus.mbd.CouplingFSI.ProtChBody method) hxyz() (proteus.mbd.CouplingFSI.ProtChBody method) hy() (proteus.mbd.CouplingFSI.ProtChBody method) hy_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) hy_rotation() (proteus.mbd.CouplingFSI.ProtChBody method) hy_translation() (proteus.mbd.CouplingFSI.ProtChBody method) hz() (proteus.mbd.CouplingFSI.ProtChBody method) hz_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) hz_rotation() (proteus.mbd.CouplingFSI.ProtChBody method) hz_translation() (proteus.mbd.CouplingFSI.ProtChBody method)

I

identifyMeasuredQuantities() (proteus.Gauges.Gauges method) ignoreSequenceStepFailure() (proteus.SplitOperator.ISO_fixed_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep_SS method) (proteus.SplitOperator.Sequential_MinFLCBDFModelStep method) (proteus.SplitOperator.SO_base method) IMEX_AD_Euler (in module proteus.TimeIntegration) IMEX_HJ_Euler (in module proteus.TimeIntegration) imposeSinusoidalMotion() (proteus.mprans.BodyDynamics.PaddleBody method) (proteus.mprans.BodyDynamics.RigidBody method) IncompressibleFractionalFlowPressureMualemVanGenuchten (class in proteus.SubsurfaceTransportCoefficients) IncompressibleFractionalFlowPressureSimplePSKs (class in proteus.SubsurfaceTransportCoefficients) IncompressibleFractionalFlowSaturationMualemVanGenuchten (class in proteus.SubsurfaceTransportCoefficients) IncompressibleFractionalFlowSaturationMualemVanGenuchtenSplitAdvDiff (class in proteus.SubsurfaceTransportCoefficients) IncompressibleFractionalFlowSaturationSimplePSKs (class in proteus.SubsurfaceTransportCoefficients) indentXML() (in module proteus.Archiver) info() (proteus.LinearSolvers.KSP_petsc4py method) (proteus.LinearSolvers.LinearSolver method) (proteus.LinearSolvers.MultilevelLinearSolver method) (proteus.LinearSolvers.NI method) (proteus.mprans.MCorr.DummyNewton method) (proteus.mprans.MCorr.ElementConstantNewton method) (proteus.mprans.MCorr.ElementNewton method) (proteus.mprans.MCorr.GlobalConstantNewton method) (proteus.mprans.MCorr3P.DummyNewton method) (proteus.mprans.MCorr3P.ElementConstantNewton method) (proteus.mprans.MCorr3P.ElementNewton method) (proteus.mprans.MCorr3P.GlobalConstantNewton method) (proteus.NonlinearSolvers.MultilevelNonlinearSolver method) (proteus.NonlinearSolvers.NLNI method) (proteus.NonlinearSolvers.NonlinearSolver method) init() (in module proteus.Comm) init_cython() (proteus.BoundaryConditions.BoundaryCondition method) initDataStructures() (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) initialAdapt() (proteus.MeshAdaptPUMI.AdaptHelper.PUMI_helper method) initialConditions (in module proteus.default_p) initialize() (proteus.mprans.AddedMass.Coefficients method) (proteus.mprans.CLSVOF.Coefficients method) (proteus.mprans.Dissipation.Coefficients method) (proteus.mprans.Kappa.Coefficients method) (proteus.mprans.MCorr.Coefficients method) (proteus.mprans.MoveMesh.Coefficients method) (proteus.mprans.MoveMeshMonitor.Coefficients method) (proteus.mprans.NCLS.Coefficients method) (proteus.mprans.Pres.Coefficients method) (proteus.mprans.PresInc.Coefficients method) (proteus.mprans.PresInit.Coefficients method) (proteus.mprans.RANS2P.Coefficients method) (proteus.mprans.RANS3PF.Coefficients method) (proteus.mprans.RDLS.Coefficients method) (proteus.mprans.VOF.Coefficients method) (proteus.TimeIntegration.ForwardIntegrator method) (proteus.TimeIntegration.SignedDistanceIntegrator method) (proteus.TimeIntegration.SteadyStateIntegrator method) (proteus.Transport.MultilevelTransport method) initialize_dt() (proteus.mprans.GN_SW2DCV.RKEV method) (proteus.mprans.NCLS.RKEV method) (proteus.mprans.SW2DCV.RKEV method) (proteus.mprans.VOF.RKEV method) (proteus.mprans.VOF3P.RKEV method) (proteus.mprans.VOS3P.RKEV method) (proteus.TimeIntegration.BackwardEuler_cfl method) (proteus.TimeIntegration.ExplicitRK_base method) (proteus.TimeIntegration.FLCBDF method) (proteus.TimeIntegration.ForwardEuler method) (proteus.TimeIntegration.ForwardEuler_A method) (proteus.TimeIntegration.TI_base method) (proteus.TimeIntegration.VBDF method) initialize_dt_model() (proteus.mprans.RDLS.PsiTC method) (proteus.StepControl.FLCBDF_controller method) (proteus.StepControl.GustafssonFullNewton_dt_controller method) (proteus.StepControl.Min_dt_cfl_controller method) (proteus.StepControl.Min_dt_controller method) (proteus.StepControl.Min_dt_controller_FCT method) (proteus.StepControl.Min_dt_RKcontroller method) (proteus.StepControl.Osher_controller method) (proteus.StepControl.Osher_PsiTC_controller method) (proteus.StepControl.Osher_PsiTC_controller2 method) (proteus.StepControl.PsiTCtte_controller method) (proteus.StepControl.SC_base method) initialize_dt_system() (proteus.SplitOperator.ISO_fixed_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep_SS method) (proteus.SplitOperator.Sequential_MinFLCBDFModelStep method) (proteus.SplitOperator.Sequential_MinModelStep method) (proteus.SplitOperator.Sequential_tnList method) (proteus.SplitOperator.SequentialNotInOrder_MinAdaptiveModelStep method) (proteus.SplitOperator.SequentialNotInOrder_MinFLCBDFModelStep method) (proteus.SplitOperator.SO_base method) initializeAll() (proteus.TwoPhaseFlow.TwoPhaseFlowProblem.TwoPhaseFlowProblem method) initializeBeams() (proteus.mprans.RANS2P_IB.Coefficients method) initializeCoords() (proteus.mprans.beamFEM.FEMTools method) initialized (proteus.mbd.CouplingFSI.ProtChMoorings attribute) (proteus.mbd.CouplingFSI.ProtChSystem attribute) initializeElementBoundaryQuadrature() (proteus.ADR.Coefficients method) (proteus.mprans.AddedMass.Coefficients method) (proteus.mprans.CLSVOF.Coefficients method) (proteus.mprans.Dissipation.Coefficients method) (proteus.mprans.GN_SW2DCV.Coefficients method) (proteus.mprans.Kappa.Coefficients method) (proteus.mprans.MCorr.Coefficients method) (proteus.mprans.MCorr3P.Coefficients method) (proteus.mprans.NCLS.Coefficients method) (proteus.mprans.NCLS3P.Coefficients method) (proteus.mprans.Pres.Coefficients method) (proteus.mprans.PresInc.Coefficients method) (proteus.mprans.PresInit.Coefficients method) (proteus.mprans.RANS2P.Coefficients method) (proteus.mprans.RANS3PF.Coefficients method) (proteus.mprans.RANS3PSed.Coefficients method) (proteus.mprans.RDLS.Coefficients method) (proteus.mprans.SW2D.Coefficients method) (proteus.mprans.SW2DCV.Coefficients method) (proteus.mprans.VOF.Coefficients method) (proteus.mprans.VOF3P.Coefficients method) (proteus.mprans.VOS3P.Coefficients method) (proteus.richards.Richards.Coefficients method) (proteus.SubsurfaceTransportCoefficients.ConservativeHeadRichardsMualemVanGenuchten method) (proteus.SubsurfaceTransportCoefficients.GroundwaterTransportCoefficients method) (proteus.SubsurfaceTransportCoefficients.MultiphaseGroundwaterTransportCoefficients method) (proteus.SubsurfaceTransportCoefficients.SinglePhaseDarcyCoefficients method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_fc_pp method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_pp_pressure_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_pp_saturation_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_pressure_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_saturation_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcyFlow_base method) (proteus.TransportCoefficients.CLevelSetCoefficients method) (proteus.TransportCoefficients.ConservativeHeadRichardsBrooksCoreyBurdineHet method) (proteus.TransportCoefficients.ConservativeHeadRichardsJLeverett method) (proteus.TransportCoefficients.ConservativeHeadRichardsJLeverettAni method) (proteus.TransportCoefficients.ConservativeHeadRichardsL2projMualemVanGenuchtenBlockHet method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHet method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2 method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2withUpwind method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenHet method) (proteus.TransportCoefficients.DiffusiveWave_1D method) (proteus.TransportCoefficients.DiffusiveWave_2D method) (proteus.TransportCoefficients.kEpsilon method) (proteus.TransportCoefficients.kEpsilon_epsilon method) (proteus.TransportCoefficients.kEpsilon_k method) (proteus.TransportCoefficients.LevelSetConservation method) (proteus.TransportCoefficients.LevelSetCurvatureCoefficients method) (proteus.TransportCoefficients.LevelSetNormalCoefficients method) (proteus.TransportCoefficients.NCLevelSetCoefficients method) (proteus.TransportCoefficients.PoissonEquationCoefficients method) (proteus.TransportCoefficients.RedistanceLevelSet method) (proteus.TransportCoefficients.ReynoldsAveragedNavierStokes_kEpsilon method) (proteus.TransportCoefficients.SeepageBrezis method) (proteus.TransportCoefficients.ShallowWater method) (proteus.TransportCoefficients.TC_base method) (proteus.TransportCoefficients.ThreephaseNavierStokes_ST_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_ST_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_VOF_SO method) (proteus.TransportCoefficients.TwophaseReynoldsAveragedNavierStokes_AlgebraicClosure method) (proteus.TransportCoefficients.TwophaseStokes_LS_SO method) (proteus.TransportCoefficients.VOFCoefficients method) (proteus.TransportCoefficients.VolumeAveragedNavierStokesFullDevStress method) (proteus.TransportCoefficients.VolumeAveragedTwophaseNavierStokes method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcy_split_pressure method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcy_split_saturation method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcyFlow_base method) initializeElementQuadrature() (proteus.ADR.Coefficients method) (proteus.ADR.ShockCapturing method) (proteus.ADR.SubgridError method) (proteus.elastoplastic.ElastoPlastic.Coefficients method) (proteus.mprans.AddedMass.Coefficients method) (proteus.mprans.CLSVOF.Coefficients method) (proteus.mprans.Dissipation.Coefficients method) (proteus.mprans.Dissipation.ShockCapturing method) (proteus.mprans.Dissipation.SubgridError method) (proteus.mprans.GN_SW2DCV.Coefficients method) (proteus.mprans.Kappa.Coefficients method) (proteus.mprans.Kappa.ShockCapturing method) (proteus.mprans.Kappa.SubgridError method) (proteus.mprans.MCorr.Coefficients method) (proteus.mprans.MCorr3P.Coefficients method) (proteus.mprans.MoveMesh.Coefficients method) (proteus.mprans.NCLS.Coefficients method) (proteus.mprans.NCLS.ShockCapturing method) (proteus.mprans.NCLS.SubgridError method) (proteus.mprans.NCLS3P.Coefficients method) (proteus.mprans.NCLS3P.ShockCapturing method) (proteus.mprans.NCLS3P.SubgridError method) (proteus.mprans.Pres.Coefficients method) (proteus.mprans.PresInc.Coefficients method) (proteus.mprans.PresInit.Coefficients method) (proteus.mprans.RANS2P.Coefficients method) (proteus.mprans.RANS2P.ShockCapturing method) (proteus.mprans.RANS2P.SubgridError method) (proteus.mprans.RANS2P_IB.Coefficients method) (proteus.mprans.RANS3PF.Coefficients method) (proteus.mprans.RANS3PF.ShockCapturing method) (proteus.mprans.RANS3PF.SubgridError method) (proteus.mprans.RANS3PSed.Coefficients method) (proteus.mprans.RANS3PSed.ShockCapturing method) (proteus.mprans.RANS3PSed.SubgridError method) (proteus.mprans.RDLS.Coefficients method) (proteus.mprans.RDLS.ShockCapturing method) (proteus.mprans.RDLS.SubgridError method) (proteus.mprans.SW2D.Coefficients method) (proteus.mprans.SW2D.ShockCapturing method) (proteus.mprans.SW2D.SubgridError method) (proteus.mprans.SW2DCV.Coefficients method) (proteus.mprans.VOF.Coefficients method) (proteus.mprans.VOF.ShockCapturing method) (proteus.mprans.VOF.SubgridError method) (proteus.mprans.VOF3P.Coefficients method) (proteus.mprans.VOF3P.ShockCapturing method) (proteus.mprans.VOF3P.SubgridError method) (proteus.mprans.VOS3P.Coefficients method) (proteus.mprans.VOS3P.ShockCapturing method) (proteus.mprans.VOS3P.SubgridError method) (proteus.richards.Richards.Coefficients method) (proteus.ShockCapturing.NavierStokes_SC method) (proteus.ShockCapturing.NavierStokes_SC_opt method) (proteus.ShockCapturing.ResGradDelayLag_SC method) (proteus.ShockCapturing.ResGradFFDarcyDelayLag_SC method) (proteus.ShockCapturing.ResGradQuadDelayLag_SC method) (proteus.ShockCapturing.ShockCapturing_base method) (proteus.SubgridError.Advection_ASGS method) (proteus.SubgridError.AdvectionDiffusionReaction_ASGS method) (proteus.SubgridError.AdvectionDiffusionReactionHaukeSangalliInterpolant_ASGS method) (proteus.SubgridError.AdvectionDiffusionReactionHaukeSangalliInterpolantWithTransientSubScales_ASGS method) (proteus.SubgridError.AdvectionDiffusionReactionTransientSubscales_ASGS method) (proteus.SubgridError.AdvectionLag_ASGS method) (proteus.SubgridError.DarcyFC_ASGS method) (proteus.SubgridError.FFDarcyFC_ASGS method) (proteus.SubgridError.HamiltonJacobi_ASGS method) (proteus.SubgridError.HamiltonJacobi_ASGS_opt method) (proteus.SubgridError.HamiltonJacobiDiffusionReaction_ASGS method) (proteus.SubgridError.NavierStokesASGS_velocity_pressure method) (proteus.SubgridError.NavierStokesASGS_velocity_pressure_opt method) (proteus.SubgridError.NavierStokesASGS_velocity_pressure_optV2 method) (proteus.SubgridError.NavierStokesTransientSubScalesASGS_velocity_pressure method) (proteus.SubgridError.NavierStokesWithBodyForceASGS_velocity_pressure method) (proteus.SubgridError.SGE_base method) (proteus.SubgridError.TwophaseStokes_LS_FC_ASGS method) (proteus.SubsurfaceTransportCoefficients.ConservativeHeadRichardsMualemVanGenuchten method) (proteus.SubsurfaceTransportCoefficients.GroundwaterTransportCoefficients method) (proteus.SubsurfaceTransportCoefficients.MultiphaseGroundwaterTransportCoefficients method) (proteus.SubsurfaceTransportCoefficients.SinglePhaseDarcyCoefficients method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_fc_pp method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_pp_pressure_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_pp_saturation_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_pressure_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_saturation_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcyFlow_base method) (proteus.TransportCoefficients.CLevelSetCoefficients method) (proteus.TransportCoefficients.ConservativeHeadRichardsBrooksCoreyBurdineHet method) (proteus.TransportCoefficients.ConservativeHeadRichardsJLeverett method) (proteus.TransportCoefficients.ConservativeHeadRichardsJLeverettAni method) (proteus.TransportCoefficients.ConservativeHeadRichardsL2projMualemVanGenuchtenBlockHet method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHet method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2 method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2withUpwind method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenHet method) (proteus.TransportCoefficients.DiffusiveWave_1D method) (proteus.TransportCoefficients.DiffusiveWave_2D method) (proteus.TransportCoefficients.kEpsilon method) (proteus.TransportCoefficients.kEpsilon_epsilon method) (proteus.TransportCoefficients.kEpsilon_k method) (proteus.TransportCoefficients.LevelSetConservation method) (proteus.TransportCoefficients.LevelSetCurvatureCoefficients method) (proteus.TransportCoefficients.LevelSetNormalCoefficients method) (proteus.TransportCoefficients.NCLevelSetCoefficients method) (proteus.TransportCoefficients.PoissonEquationCoefficients method) (proteus.TransportCoefficients.RedistanceLevelSet method) (proteus.TransportCoefficients.ReynoldsAveragedNavierStokes_kEpsilon method) (proteus.TransportCoefficients.SeepageBrezis method) (proteus.TransportCoefficients.ShallowWater method) (proteus.TransportCoefficients.TC_base method) (proteus.TransportCoefficients.ThreephaseNavierStokes_ST_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_ST_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_VOF_SO method) (proteus.TransportCoefficients.TwophaseReynoldsAveragedNavierStokes_AlgebraicClosure method) (proteus.TransportCoefficients.TwophaseStokes_LS_SO method) (proteus.TransportCoefficients.TwophaseStokes_VOF_SO method) (proteus.TransportCoefficients.VOFCoefficients method) (proteus.TransportCoefficients.VolumeAveragedNavierStokesFullDevStress method) (proteus.TransportCoefficients.VolumeAveragedTwophaseNavierStokes method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcy_split_pressure method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcy_split_saturation method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcyFlow_base method)

initializeGeneralizedInterpolationPointQuadrature() (proteus.mprans.AddedMass.Coefficients method) (proteus.mprans.Pres.Coefficients method) (proteus.mprans.PresInc.Coefficients method) (proteus.mprans.PresInit.Coefficients method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_fc_pp method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_pp_pressure_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_pp_saturation_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_pressure_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_saturation_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcyFlow_base method) (proteus.TransportCoefficients.DiffusiveWave_1D method) (proteus.TransportCoefficients.DiffusiveWave_2D method) (proteus.TransportCoefficients.ShallowWater method) (proteus.TransportCoefficients.TC_base method) (proteus.TransportCoefficients.VolumeAveragedNavierStokesFullDevStress method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcy_split_pressure method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcy_split_saturation method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcyFlow_base method) initializeGlobalExteriorElementBoundaryQuadrature() (proteus.ADR.Coefficients method) (proteus.elastoplastic.ElastoPlastic.Coefficients method) (proteus.mprans.AddedMass.Coefficients method) (proteus.mprans.CLSVOF.Coefficients method) (proteus.mprans.Dissipation.Coefficients method) (proteus.mprans.GN_SW2DCV.Coefficients method) (proteus.mprans.Kappa.Coefficients method) (proteus.mprans.MCorr.Coefficients method) (proteus.mprans.MCorr3P.Coefficients method) (proteus.mprans.MoveMesh.Coefficients method) (proteus.mprans.NCLS.Coefficients method) (proteus.mprans.NCLS3P.Coefficients method) (proteus.mprans.Pres.Coefficients method) (proteus.mprans.PresInc.Coefficients method) (proteus.mprans.PresInit.Coefficients method) (proteus.mprans.RANS2P.Coefficients method) (proteus.mprans.RANS2P_IB.Coefficients method) (proteus.mprans.RANS3PF.Coefficients method) (proteus.mprans.RANS3PSed.Coefficients method) (proteus.mprans.RDLS.Coefficients method) (proteus.mprans.SW2D.Coefficients method) (proteus.mprans.SW2DCV.Coefficients method) (proteus.mprans.VOF.Coefficients method) (proteus.mprans.VOF3P.Coefficients method) (proteus.mprans.VOS3P.Coefficients method) (proteus.richards.Richards.Coefficients method) (proteus.SubsurfaceTransportCoefficients.ConservativeHeadRichardsMualemVanGenuchten method) (proteus.SubsurfaceTransportCoefficients.GroundwaterTransportCoefficients method) (proteus.SubsurfaceTransportCoefficients.MultiphaseGroundwaterTransportCoefficients method) (proteus.SubsurfaceTransportCoefficients.SinglePhaseDarcyCoefficients method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_fc_pp method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_pp_pressure_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_pp_saturation_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_pressure_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_split_saturation_base method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcyFlow_base method) (proteus.TransportCoefficients.CLevelSetCoefficients method) (proteus.TransportCoefficients.ConservativeHeadRichardsBrooksCoreyBurdineHet method) (proteus.TransportCoefficients.ConservativeHeadRichardsJLeverett method) (proteus.TransportCoefficients.ConservativeHeadRichardsJLeverettAni method) (proteus.TransportCoefficients.ConservativeHeadRichardsL2projMualemVanGenuchtenBlockHet method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHet method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2 method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2withUpwind method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenHet method) (proteus.TransportCoefficients.DiffusiveWave_1D method) (proteus.TransportCoefficients.DiffusiveWave_2D method) (proteus.TransportCoefficients.kEpsilon method) (proteus.TransportCoefficients.kEpsilon_epsilon method) (proteus.TransportCoefficients.kEpsilon_k method) (proteus.TransportCoefficients.LevelSetConservation method) (proteus.TransportCoefficients.LevelSetCurvatureCoefficients method) (proteus.TransportCoefficients.LevelSetNormalCoefficients method) (proteus.TransportCoefficients.NCLevelSetCoefficients method) (proteus.TransportCoefficients.PoissonEquationCoefficients method) (proteus.TransportCoefficients.RedistanceLevelSet method) (proteus.TransportCoefficients.ReynoldsAveragedNavierStokes_kEpsilon method) (proteus.TransportCoefficients.SeepageBrezis method) (proteus.TransportCoefficients.ShallowWater method) (proteus.TransportCoefficients.TC_base method) (proteus.TransportCoefficients.ThreephaseNavierStokes_ST_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_ST_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_VOF_SO method) (proteus.TransportCoefficients.TwophaseReynoldsAveragedNavierStokes_AlgebraicClosure method) (proteus.TransportCoefficients.TwophaseStokes_LS_SO method) (proteus.TransportCoefficients.TwophaseStokes_VOF_SO method) (proteus.TransportCoefficients.VOFCoefficients method) (proteus.TransportCoefficients.VolumeAveragedNavierStokesFullDevStress method) (proteus.TransportCoefficients.VolumeAveragedTwophaseNavierStokes method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcy_split_pressure method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcy_split_saturation method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcyFlow_base method) initializeJacobian() (proteus.Transport.OneLevelTransport method) initializeMassJacobian() (proteus.Transport.OneLevelTransport method) initializeMaterialTypes() (proteus.SubsurfaceTransportCoefficients.BlockHeterogeneousCoefficients method) initializeMesh() (proteus.ADR.Coefficients method) (proteus.elastoplastic.ElastoPlastic.Coefficients method) (proteus.mprans.AddedMass.Coefficients method) (proteus.mprans.CLSVOF.Coefficients method) (proteus.mprans.Dissipation.Coefficients method) (proteus.mprans.GN_SW2DCV.Coefficients method) (proteus.mprans.Kappa.Coefficients method) (proteus.mprans.MCorr.Coefficients method) (proteus.mprans.MCorr3P.Coefficients method) (proteus.mprans.MoveMesh.Coefficients method) (proteus.mprans.MoveMeshMonitor.Coefficients method) (proteus.mprans.Pres.Coefficients method) (proteus.mprans.PresInc.Coefficients method) (proteus.mprans.PresInit.Coefficients method) (proteus.mprans.RANS2P.Coefficients method) (proteus.mprans.RANS2P_IB.Coefficients method) (proteus.mprans.RANS3PF.Coefficients method) (proteus.mprans.RANS3PSed.Coefficients method) (proteus.mprans.RDLS.Coefficients method) (proteus.mprans.SW2D.Coefficients method) (proteus.mprans.SW2DCV.Coefficients method) (proteus.mprans.VOF.Coefficients method) (proteus.mprans.VOF3P.Coefficients method) (proteus.mprans.VOS3P.Coefficients method) (proteus.richards.Richards.Coefficients method) (proteus.SubsurfaceTransportCoefficients.ConservativeHeadRichardsMualemVanGenuchten method) (proteus.SubsurfaceTransportCoefficients.GroundwaterTransportCoefficients method) (proteus.SubsurfaceTransportCoefficients.MultiphaseGroundwaterTransportCoefficients method) (proteus.SubsurfaceTransportCoefficients.SinglePhaseDarcyCoefficients method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcyFlow_base method) (proteus.TransportCoefficients.ConservativeHeadRichardsJLeverett method) (proteus.TransportCoefficients.ConservativeHeadRichardsJLeverettAni method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2 method) (proteus.TransportCoefficients.ConservativeHeadRichardsMualemVanGenuchtenBlockHetV2withUpwind method) (proteus.TransportCoefficients.DiffusiveWave_1D method) (proteus.TransportCoefficients.DiffusiveWave_2D method) (proteus.TransportCoefficients.kEpsilon method) (proteus.TransportCoefficients.kEpsilon_epsilon method) (proteus.TransportCoefficients.kEpsilon_k method) (proteus.TransportCoefficients.LevelSetConservation method) (proteus.TransportCoefficients.LevelSetCurvatureCoefficients method) (proteus.TransportCoefficients.LevelSetNormalCoefficients method) (proteus.TransportCoefficients.MovingMesh method) (proteus.TransportCoefficients.RedistanceLevelSet method) (proteus.TransportCoefficients.ReynoldsAveragedNavierStokes_kEpsilon method) (proteus.TransportCoefficients.SeepageBrezis method) (proteus.TransportCoefficients.ShallowWater method) (proteus.TransportCoefficients.TC_base method) (proteus.TransportCoefficients.ThreephaseNavierStokes_ST_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_ST_LS_SO method) (proteus.TransportCoefficients.TwophaseNavierStokes_VOF_SO method) (proteus.TransportCoefficients.TwophaseReynoldsAveragedNavierStokes_AlgebraicClosure method) (proteus.TransportCoefficients.TwophaseStokes_LS_SO method) (proteus.TransportCoefficients.TwophaseStokes_VOF_SO method) (proteus.TransportCoefficients.VOFCoefficients method) (proteus.TransportCoefficients.VolumeAveragedNavierStokesFullDevStress method) (proteus.TransportCoefficients.VolumeAveragedTwophaseNavierStokes method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcyFlow_base method) initializeMeshInfo() (proteus.TimeIntegration.DGlimiterP1Lagrange1d method) (proteus.TimeIntegration.DGlimiterP2Lagrange1d method) (proteus.TimeIntegration.DGlimiterPkMonomial1d method) (proteus.TimeIntegration.UnstructuredLimiter_base method) initializeNumerics() (proteus.TwoPhaseFlow.utils.Parameters.ParametersModelBase method) initializeParameters() (proteus.TwoPhaseFlow.utils.Parameters.ParametersHolder method) initializePETScOptions() (proteus.TwoPhaseFlow.utils.Parameters.ParametersModelBase method) initializePhi() (proteus.mprans.beamFEM.FEMTools method) initializePhysics() (proteus.TwoPhaseFlow.utils.Parameters.ParametersModelBase method) initializeQ() (proteus.LinearSolvers.SchurOperatorConstructor method) initializeQuadratureWithPhaseFunction() (proteus.TransportCoefficients.DiscreteTwoPhaseAdvectionOperator method) initializeSO() (proteus.TwoPhaseFlow.TwoPhaseFlowProblem.TwoPhaseFlowProblem method) initializeSpaceHistory() (proteus.TimeIntegration.ForwardEuler method) (proteus.TimeIntegration.ForwardEuler_A method) (proteus.TimeIntegration.ForwardEuler_H method) (proteus.TimeIntegration.OuterTheta method) (proteus.TimeIntegration.TI_base method) initializeSpatialJacobian() (proteus.Transport.OneLevelTransport method) initializeTimeHistory() (proteus.mprans.GN_SW2DCV.RKEV method) (proteus.mprans.MCorr.Newton_controller method) (proteus.mprans.MCorr3P.Newton_controller method) (proteus.mprans.NCLS.RKEV method) (proteus.mprans.SW2DCV.RKEV method) (proteus.mprans.VOF.RKEV method) (proteus.mprans.VOF3P.RKEV method) (proteus.mprans.VOS3P.RKEV method) (proteus.StepControl.SC_base method) (proteus.TimeIntegration.BackwardEuler method) (proteus.TimeIntegration.CentralDifference_2ndD method) (proteus.TimeIntegration.ExplicitRK_base method) (proteus.TimeIntegration.FLCBDF method) (proteus.TimeIntegration.ForwardEuler_A method) (proteus.TimeIntegration.PsiTCtte method) (proteus.TimeIntegration.TI_base method) (proteus.TimeIntegration.VBDF method) (proteus.Transport.OneLevelTransport method) initializeTimeIntegration() (proteus.SubgridError.AdvectionDiffusionReactionHaukeSangalliInterpolant_ASGS method) (proteus.SubgridError.AdvectionDiffusionReactionTransientSubscales_ASGS method) (proteus.SubgridError.NavierStokesTransientSubScalesASGS_velocity_pressure method) (proteus.SubgridError.SGE_base method) (proteus.Transport.OneLevelTransport method) initializeTwoPhaseCp_rho() (proteus.LinearSolvers.SchurOperatorConstructor method) initializeTwoPhaseInvScaledAp() (proteus.LinearSolvers.SchurOperatorConstructor method) initializeTwoPhaseInvScaledQp() (proteus.LinearSolvers.SchurOperatorConstructor method) initializeTwoPhaseQp_rho() (proteus.LinearSolvers.SchurOperatorConstructor method) initializeViewSolution() (proteus.NumericalSolution.NS_base method) InitializeXdmf() (in module proteus.mprans.ArchiveBeams) initOutputWriter() (proteus.Gauges.Gauges method) initVectors() (proteus.mprans.VOF.LevelModel method) (proteus.mprans.VOF3P.LevelModel method) inputMotion() (proteus.mprans.BodyDynamics.PaddleBody method) (proteus.mprans.BodyDynamics.RigidBody method) InterlacedDofOrderType (class in proteus.LinearSolvers) interpolateBathymetry() (proteus.MeshTools.InterpolatedBathymetryMesh method) InterpolatedBathymetryDomain (class in proteus.Domain) InterpolatedBathymetryMesh (class in proteus.MeshTools) InterpolationConditions (class in proteus.FemTools) intersectEdges() (in module proteus.MeshTools) intersectPoints() (in module proteus.MeshTools) intersectPolyhedron() (in module proteus.MeshTools) inv() (in module proteus.EGeometry) InvOperatorShell (class in proteus.LinearAlgebraTools) Ipars (class in proteus.InputTranslators) isInitialized() (proteus.Comm.Comm method) isMaster() (proteus.Comm.Comm method) ISO_fixed_MinAdaptiveModelStep (class in proteus.SplitOperator) isOnLine() (proteus.Domain.D_base method) isVector (proteus.FemTools.FiniteElementFunction attribute)

J

Jacobi (class in proteus.LinearSolvers)

JaffreGradU_SC (class in proteus.ShockCapturing) JONSWAP() (in module proteus.WaveTools)

K

k_advective (proteus.mprans.BoundaryConditions.BC_RANS attribute) k_diffusive (proteus.mprans.BoundaryConditions.BC_RANS attribute) k_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) kappaNearWall() (proteus.mprans.BoundaryConditions.kWall method) kDir (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) kEpsilon (class in proteus.TransportCoefficients) kEpsilon_2D_Evaluate() (proteus.TransportCoefficients.kEpsilon method) kEpsilon_2D_Evaluate_sd() (proteus.TransportCoefficients.kEpsilon method) kEpsilon_3D_Evaluate_sd() (proteus.TransportCoefficients.kEpsilon method) kEpsilon_epsilon (class in proteus.TransportCoefficients) kEpsilon_epsilon_2D_Evaluate_sd() (proteus.TransportCoefficients.kEpsilon_epsilon method) kEpsilon_epsilon_3D_Evaluate_sd() (proteus.TransportCoefficients.kEpsilon_epsilon method)

kEpsilon_k (class in proteus.TransportCoefficients) kEpsilon_k_2D_Evaluate_sd() (proteus.mprans.Dissipation.Coefficients method) (proteus.mprans.Kappa.Coefficients method) (proteus.TransportCoefficients.kEpsilon_k method) kEpsilon_k_3D_Evaluate_sd() (proteus.mprans.Dissipation.Coefficients method) (proteus.mprans.Kappa.Coefficients method) (proteus.TransportCoefficients.kEpsilon_k method) ki (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) KSP_petsc4py (class in proteus.LinearSolvers) KSP_Preconditioner (class in proteus.LinearSolvers) kth_FCT_step() (proteus.mprans.VOS3P.LevelModel method) kWall (class in proteus.mprans.BoundaryConditions)

L

L (in module proteus.default_p) L1errorSFEM() (in module proteus.Norms) L1errorSFEM2() (in module proteus.Norms) L1errorSFEMvsAF() (in module proteus.Norms) L1errorSFEMvsAF2() (in module proteus.Norms) L1errorVFEM() (in module proteus.Norms) L1errorVFEM2() (in module proteus.Norms) L1errorVFEMvsAF() (in module proteus.Norms) L1errorVFEMvsAF2() (in module proteus.Norms) l1Norm() (in module proteus.LinearAlgebraTools) L2errorFEMvsAF() (in module proteus.DiagUtils) L2errorSFEM() (in module proteus.Norms) L2errorSFEM2() (in module proteus.Norms) L2errorSFEM_local() (in module proteus.Norms) L2errorSFEMvsAF() (in module proteus.Norms) L2errorSFEMvsAF2() (in module proteus.Norms) L2errorVFEM() (in module proteus.Norms) L2errorVFEM2() (in module proteus.Norms) L2errorVFEMvsAF() (in module proteus.Norms) L2errorVFEMvsAF2() (in module proteus.Norms) l2Norm() (in module proteus.LinearAlgebraTools) l2Norm_local() (in module proteus.LinearAlgebraTools) l2NormAvg() (in module proteus.LinearAlgebraTools) L2normSFEM() (in module proteus.Norms) L2projectEvaluate() (proteus.ADR.Coefficients method) (proteus.TransportCoefficients.PoissonEquationCoefficients method) l_atol_res (in module proteus.default_n) LagrangeCubeFactory() (in module proteus.FemTools) LagrangeOnCubeWithNodalBasis (class in proteus.FemTools) Laplace_2D_Evaluate() (proteus.TransportCoefficients.DiscreteLaplaceOperator method) Laplace_3D_Evaluate() (proteus.TransportCoefficients.DiscreteLaplaceOperator method) lastStepErrorOk() (proteus.TimeIntegration.FLCBDF method) (proteus.TimeIntegration.TI_base method) (proteus.TimeIntegration.VBDF method) LatexResultsSummary (class in proteus.LatexReport) LevelModel (class in proteus.ADR) (class in proteus.elastoplastic.ElastoPlastic) (class in proteus.mprans.AddedMass) (class in proteus.mprans.CLSVOF) (class in proteus.mprans.Dissipation) (class in proteus.mprans.GN_SW2DCV) (class in proteus.mprans.Kappa) (class in proteus.mprans.MCorr) (class in proteus.mprans.MCorr3P) (class in proteus.mprans.MoveMesh) (class in proteus.mprans.NCLS) (class in proteus.mprans.NCLS3P) (class in proteus.mprans.Pres) (class in proteus.mprans.PresInc) (class in proteus.mprans.PresInit) (class in proteus.mprans.RANS2P) (class in proteus.mprans.RANS2P_IB) (class in proteus.mprans.RANS3PF) (class in proteus.mprans.RANS3PSed) (class in proteus.mprans.RDLS) (class in proteus.mprans.SW2D) (class in proteus.mprans.SW2DCV) (class in proteus.mprans.VOF) (class in proteus.mprans.VOF3P) (class in proteus.mprans.VOS3P) (class in proteus.richards.Richards) levelNonlinearSolver (in module proteus.default_n) LevelSetConservation (class in proteus.TransportCoefficients) levelSetConservationCoefficientsEvaluate() (proteus.mprans.MCorr.Coefficients method) (proteus.mprans.MCorr3P.Coefficients method) (proteus.TransportCoefficients.LevelSetConservation method) levelSetConservationCoefficientsEvaluate_sd() (proteus.mprans.MCorr.Coefficients method) (proteus.mprans.MCorr3P.Coefficients method) (proteus.TransportCoefficients.LevelSetConservation method)

LevelSetCurvatureCoefficients (class in proteus.TransportCoefficients) levelSetCurvatureCoefficientsEvaluate() (proteus.TransportCoefficients.LevelSetCurvatureCoefficients method) LevelSetNormalCoefficients (class in proteus.TransportCoefficients) LIerrorSFEM() (in module proteus.Norms) LIerrorSFEMvsAF() (in module proteus.Norms) LIerrorVFEMvsAF() (in module proteus.Norms) LinearAD_DiracIC (class in proteus.AnalyticalSolutions) LinearAD_SteadyState (class in proteus.AnalyticalSolutions) linearADR_ConstantCoefficientsEvaluate() (proteus.TransportCoefficients.LinearVADR_ConstantCoefficients method) (proteus.TransportCoefficients.LinearVADR_ConstantCoefficients_full method) (proteus.TransportCoefficients.LinearVADR_ConstantCoefficients_lower method) (proteus.TransportCoefficients.LinearVADR_ConstantCoefficients_skew method) (proteus.TransportCoefficients.LinearVADR_ConstantCoefficients_upper method) LinearADR_Decay_DiracIC (class in proteus.AnalyticalSolutions) LinearADR_Sine (class in proteus.AnalyticalSolutions) LinearElasticity (class in proteus.TransportCoefficients) LinearElasticity_1D_Evaluate() (proteus.TransportCoefficients.LinearElasticity method) LinearElasticity_2D_Evaluate() (proteus.TransportCoefficients.LinearElasticity method) LinearElasticity_3D_Evaluate() (proteus.TransportCoefficients.LinearElasticity method) LinearOnCubeWithNodalBasis (class in proteus.FemTools) LinearOnSimplexWithNodalBasis (class in proteus.FemTools) LinearSolver (class in proteus.LinearSolvers) LinearSSPRKintegration (class in proteus.TimeIntegration) LinearSSPRKPIintegration (class in proteus.TimeIntegration) LinearVADR_ConstantCoefficients (class in proteus.TransportCoefficients) LinearVADR_ConstantCoefficients_full (class in proteus.TransportCoefficients) LinearVADR_ConstantCoefficients_lower (class in proteus.TransportCoefficients) LinearVADR_ConstantCoefficients_skew (class in proteus.TransportCoefficients) LinearVADR_ConstantCoefficients_upper (class in proteus.TransportCoefficients) LineGauges() (in module proteus.Gauges) LineIntegralGauges() (in module proteus.Gauges) lInfNorm() (in module proteus.LinearAlgebraTools) load_macros() (in module proteus.iproteus) load_numerics() (in module proteus.defaults) load_physics() (in module proteus.defaults) load_system() (in module proteus.defaults) loadExistingFunction() (in module proteus.WaveTools) LobattoEdge (class in proteus.Quadrature) LobattoEdgeAlt (class in proteus.Quadrature) LobattoPoint (in module proteus.Quadrature) LobattoTetrahedron (class in proteus.Quadrature) LobattoTriangle (class in proteus.Quadrature) LocalFunctionSpace (class in proteus.FemTools) locallyRefine() (proteus.MeshTools.MultilevelEdgeMesh method) (proteus.MeshTools.MultilevelMesh method) (proteus.MeshTools.MultilevelTriangularMesh method) locatePoints() (proteus.MeshTools.InterpolatedBathymetryMesh method) locatePoints_initial() (proteus.MeshTools.InterpolatedBathymetryMesh method) locatePoints_refined() (proteus.MeshTools.InterpolatedBathymetryMesh method) log_bodies_h5() (proteus.mbd.CouplingFSI.ProtChSystem method) log_bodies_text() (proteus.mbd.CouplingFSI.ProtChSystem method) log_chrono_bodies (proteus.mbd.CouplingFSI.ProtChSystem attribute) log_chrono_format (proteus.mbd.CouplingFSI.ProtChSystem attribute) log_chrono_residuals (proteus.mbd.CouplingFSI.ProtChSystem attribute) log_chrono_springs (proteus.mbd.CouplingFSI.ProtChSystem attribute) log_residuals_h5() (proteus.mbd.CouplingFSI.ProtChSystem method) log_residuals_text() (proteus.mbd.CouplingFSI.ProtChSystem method) log_springs_h5() (proteus.mbd.CouplingFSI.ProtChSystem method) log_springs_text() (proteus.mbd.CouplingFSI.ProtChSystem method) log_times_h5() (proteus.mbd.CouplingFSI.ProtChSystem method) logEvent() (in module proteus.Profiling) LSCInv_shell (class in proteus.LinearAlgebraTools) ltol_u (in module proteus.default_n) LU (class in proteus.LinearSolvers)

M

M (proteus.mbd.CouplingFSI.ProtChBody attribute) M_Aij (proteus.mbd.CouplingFSI.ProtChBody attribute) M_Aij_last (proteus.mbd.CouplingFSI.ProtChBody attribute) M_applied (proteus.mbd.CouplingFSI.ProtChBody attribute) M_applied_last (proteus.mbd.CouplingFSI.ProtChBody attribute) M_last (proteus.mbd.CouplingFSI.ProtChBody attribute) M_prot (proteus.mbd.CouplingFSI.ProtChBody attribute) M_prot_last (proteus.mbd.CouplingFSI.ProtChBody attribute) Mass_2D_Evaluate() (proteus.TransportCoefficients.DiscreteMassMatrix method) Mass_3D_Evaluate() (proteus.TransportCoefficients.DiscreteMassMatrix method) massLumping (in module proteus.default_n) MassOverRegion (class in proteus.AuxiliaryVariables) Mat() (in module proteus.LinearAlgebraTools) math (proteus.SimTools.SimulationProcessor attribute) matlabOn() (in module proteus.Viewers) MatlabWriter (class in proteus.Viewers) MatrixInvShell (class in proteus.LinearAlgebraTools) MatrixShell (class in proteus.LinearAlgebraTools) memHardLimitOn() (in module proteus.Profiling) memHardLimitOn_callback() (in module proteus.Profiling) memory() (in module proteus.Profiling) memorySummary() (in module proteus.Profiling) memProfOn() (in module proteus.Profiling) memProfOn_callback() (in module proteus.Profiling) Mesh (class in proteus.MeshTools) (proteus.mbd.CouplingFSI.ProtChMoorings attribute) Mesh2DM (class in proteus.MeshTools) Mesh2DMDomain (class in proteus.Domain) Mesh3DM (class in proteus.MeshTools) Mesh3DMDomain (class in proteus.Domain) meshfile (in module proteus.default_p) MeshHexDomain (class in proteus.Domain) meshInfo() (proteus.MeshTools.EdgeMesh method) (proteus.MeshTools.HexahedralMesh method) (proteus.MeshTools.QuadrilateralMesh method) (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method) MeshOptions (class in proteus.MeshTools) MeshParallelPartitioningTypes (class in proteus.MeshTools) MeshTetgenDomain (class in proteus.Domain) meshType() (proteus.MeshTools.HexahedralMesh method) (proteus.MeshTools.QuadrilateralMesh method) (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method) MGM (class in proteus.LinearSolvers) Min_dt_cfl_controller (class in proteus.StepControl) Min_dt_controller (class in proteus.StepControl) Min_dt_controller_FCT (class in proteus.StepControl) Min_dt_RKcontroller (class in proteus.StepControl) MinAlgo_base (class in proteus.Optimizers) mitsuyasu() (in module proteus.WaveTools) MixedDarcy_exterior (class in proteus.NumericalFlux) model (proteus.mbd.CouplingFSI.ProtChAddedMass attribute) (proteus.mbd.CouplingFSI.ProtChBody attribute) (proteus.mbd.CouplingFSI.ProtChMoorings attribute) (proteus.mbd.CouplingFSI.ProtChSystem attribute) (proteus.mprans.BoundaryConditions.RelaxationZoneWaveGenerator attribute) model_addedmass (proteus.mbd.CouplingFSI.ProtChSystem attribute) model_mesh (proteus.mbd.CouplingFSI.ProtChSystem attribute) model_module (proteus.mbd.CouplingFSI.ProtChSystem attribute) ModelInfo (class in proteus.LinearSolvers) modelStepTaken() (proteus.SplitOperator.ISO_fixed_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep_SS method) (proteus.SplitOperator.Sequential_MinFLCBDFModelStep method) (proteus.SplitOperator.Sequential_NonUniformFixedStep method) (proteus.SplitOperator.SO_base method) module proteus proteus.ADR proteus.AnalysisTools proteus.AnalyticalSolutions proteus.Archiver proteus.AuxiliaryVariables proteus.BoundaryConditions proteus.canalyticalSolutions proteus.cfemIntegrals proteus.clapack proteus.cmeshTools proteus.cnumericalFlux proteus.Comm proteus.Context proteus.cpartitioning proteus.cpostprocessing proteus.cpskRelations proteus.cshockCapturing proteus.csmoothers proteus.csparsity proteus.csubgridError proteus.cSubsurfaceTransportCoefficients proteus.ctimeIntegration proteus.ctransportCoefficients proteus.cTwophaseDarcyCoefficients proteus.default_n proteus.default_p proteus.default_s proteus.default_so proteus.defaults proteus.deim_utils proteus.DiagUtils proteus.Domain proteus.EGeometry proteus.elastoplastic proteus.elastoplastic.ElastoPlastic proteus.equivalent_polynomials proteus.ErrorEstimators proteus.FemTools proteus.fenton proteus.fenton.Fenton proteus.flcbdfWrappers proteus.Gauges proteus.InputTranslators proteus.iproteus proteus.Isosurface proteus.LatexReport proteus.LinearAlgebraTools proteus.LinearSolvers proteus.mbd proteus.mbd.CouplingFSI proteus.MeshAdaptPUMI proteus.MeshAdaptPUMI.AdaptHelper proteus.MeshAdaptPUMI.Checkpoint proteus.MeshAdaptPUMI.MeshAdapt proteus.MeshTools proteus.mprans proteus.mprans.AddedMass proteus.mprans.ArchiveBeams proteus.mprans.beamFEM proteus.mprans.BodyDynamics proteus.mprans.BoundaryConditions proteus.mprans.CLSVOF proteus.mprans.cMoveMeshMonitor proteus.mprans.Dissipation proteus.mprans.GN_SW2DCV proteus.mprans.Kappa proteus.mprans.MCorr proteus.mprans.MCorr3P proteus.mprans.MeshSmoothing proteus.mprans.MoveMesh proteus.mprans.MoveMeshMonitor proteus.mprans.NCLS proteus.mprans.NCLS3P proteus.mprans.Pres proteus.mprans.PresInc proteus.mprans.PresInit proteus.mprans.RANS2P proteus.mprans.RANS2P_IB proteus.mprans.RANS3PF proteus.mprans.RANS3PSed proteus.mprans.RDLS proteus.mprans.SpatialTools proteus.mprans.SW2D proteus.mprans.SW2DCV proteus.mprans.VOF proteus.mprans.VOF3P proteus.mprans.VOS3P proteus.NonlinearSolvers proteus.Norms proteus.NumericalFlux proteus.NumericalSolution proteus.ObjectiveFunctions proteus.Optimizers proteus.PostProcessingTools proteus.Profiling proteus.Quadrature proteus.RefUtils proteus.richards proteus.richards.Richards proteus.ShockCapturing proteus.SimTools proteus.SpatialTools proteus.SplitOperator proteus.StepControl proteus.SubgridError proteus.SubsurfaceTransportCoefficients proteus.subsurfaceTransportFunctions proteus.superluWrappers proteus.SWFlow proteus.SWFlow.SWFlowProblem proteus.SWFlow.utils proteus.TimeIntegration proteus.Transport proteus.TransportCoefficients proteus.TwophaseDarcyCoefficients proteus.TwoPhaseFlow proteus.TwoPhaseFlow.TwoPhaseFlowProblem proteus.TwoPhaseFlow.utils proteus.TwoPhaseFlow.utils.Parameters proteus.Viewers proteus.WaveTools

MonochromaticWaves (class in proteus.WaveTools) MonomialInterpolationConditions (class in proteus.FemTools) Monomials (class in proteus.FemTools) MoveMeshMonitorNewton (class in proteus.NonlinearSolvers) movingDomain (in module proteus.default_p) MovingMesh (class in proteus.TransportCoefficients) MovingMesh_1D_Evaluate() (proteus.TransportCoefficients.MovingMesh method) MovingMesh_2D_Evaluate() (proteus.TransportCoefficients.MovingMesh method) MovingMesh_3D_Evaluate() (proteus.TransportCoefficients.MovingMesh method) msh2simplex() (in module proteus.MeshTools) mult() (proteus.LinearAlgebraTools.MatrixShell method) (proteus.LinearAlgebraTools.ProductOperatorShell method) (proteus.LinearAlgebraTools.SparseMatShell method) MultilevelEdgeMesh (class in proteus.MeshTools) MultilevelHexahedralMesh (class in proteus.MeshTools) MultilevelLinearSolver (class in proteus.LinearSolvers) multilevelLinearSolverChooser() (in module proteus.LinearSolvers) MultilevelMesh (class in proteus.MeshTools) MultilevelNonlinearSolver (class in proteus.NonlinearSolvers) multilevelNonlinearSolver (in module proteus.default_n) multilevelNonlinearSolverChooser() (in module proteus.NonlinearSolvers) MultilevelNURBSMesh (class in proteus.MeshTools) MultilevelProjectionOperators (class in proteus.FemTools) MultilevelQuadrilateralMesh (class in proteus.MeshTools) MultilevelRectangularGrid (class in proteus.MeshTools) MultilevelSimplicialMesh (class in proteus.MeshTools) MultilevelTetrahedralMesh (class in proteus.MeshTools) MultilevelTransport (class in proteus.Transport) MultilevelTriangularMesh (class in proteus.MeshTools) MultiphaseGroundwaterTransportCoefficients (class in proteus.SubsurfaceTransportCoefficients) MultiSpectraRandomWaves (class in proteus.WaveTools) mwl (proteus.WaveTools.DirectionalWaves attribute) (proteus.WaveTools.MonochromaticWaves attribute) (proteus.WaveTools.MultiSpectraRandomWaves attribute) (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) (proteus.WaveTools.SolitaryWave attribute) (proteus.WaveTools.SteadyCurrent attribute) (proteus.WaveTools.TimeSeries attribute)

N

N (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) name (in module proteus.default_p) (proteus.BoundaryConditions.BC_Base attribute) (proteus.FemTools.FiniteElementFunction attribute) (proteus.mbd.CouplingFSI.ProtChBody attribute) (proteus.mbd.CouplingFSI.ProtChMoorings attribute) NavierStokes (class in proteus.TransportCoefficients) NavierStokes2D (class in proteus.LinearSolvers) NavierStokes3D (class in proteus.LinearSolvers) NavierStokes_2D_Evaluate() (proteus.TransportCoefficients.NavierStokes method) NavierStokes_3D_Evaluate() (proteus.TransportCoefficients.NavierStokes method) NavierStokes_Advection_DiagonalUpwind_Diffusion_IIPG_exterior (class in proteus.NumericalFlux) NavierStokes_Advection_DiagonalUpwind_Diffusion_SIPG_exterior (class in proteus.NumericalFlux) NavierStokes_SC (class in proteus.ShockCapturing) NavierStokes_SC_opt (class in proteus.ShockCapturing) NavierStokes_TwoPhasePCD (class in proteus.LinearSolvers) NavierStokesASGS_velocity_pressure (class in proteus.SubgridError) NavierStokesASGS_velocity_pressure_opt (class in proteus.SubgridError) NavierStokesASGS_velocity_pressure_optV2 (class in proteus.SubgridError) NavierStokesConstantPressure (class in proteus.LinearSolvers) NavierStokesPressureCorrection (class in proteus.LinearSolvers) NavierStokesSchur (class in proteus.LinearSolvers) NavierStokesTransientSubScalesASGS_velocity_pressure (class in proteus.SubgridError) NavierStokesWithBodyForceASGS_velocity_pressure (class in proteus.SubgridError) nb_elems (proteus.mbd.CouplingFSI.ProtChMoorings attribute) nBodiesIBM (proteus.mbd.CouplingFSI.ProtChSystem attribute) NC_AffineLinearOnSimplexWithNodalBasis (class in proteus.FemTools) nCalls (proteus.ADR.LevelModel attribute) (proteus.elastoplastic.ElastoPlastic.LevelModel attribute) (proteus.mprans.AddedMass.LevelModel attribute) (proteus.mprans.CLSVOF.LevelModel attribute) (proteus.mprans.Dissipation.LevelModel attribute) (proteus.mprans.GN_SW2DCV.LevelModel attribute) (proteus.mprans.Kappa.LevelModel attribute) (proteus.mprans.MCorr.LevelModel attribute) (proteus.mprans.MCorr3P.LevelModel attribute) (proteus.mprans.MoveMesh.LevelModel attribute) (proteus.mprans.NCLS.LevelModel attribute) (proteus.mprans.NCLS3P.LevelModel attribute) (proteus.mprans.Pres.LevelModel attribute) (proteus.mprans.PresInc.LevelModel attribute) (proteus.mprans.PresInit.LevelModel attribute) (proteus.mprans.RANS2P.LevelModel attribute) (proteus.mprans.RANS3PF.LevelModel attribute) (proteus.mprans.RANS3PSed.LevelModel attribute) (proteus.mprans.RDLS.LevelModel attribute) (proteus.mprans.SW2D.LevelModel attribute) (proteus.mprans.SW2DCV.LevelModel attribute) (proteus.mprans.VOF.LevelModel attribute) (proteus.mprans.VOF3P.LevelModel attribute) (proteus.mprans.VOS3P.LevelModel attribute) (proteus.richards.Richards.LevelModel attribute) nChooseK() (proteus.FemTools.BernsteinOnCube method) NCLevelSetCoefficients (class in proteus.TransportCoefficients) ncLevelSetCoefficientsEvaluate() (proteus.mprans.NCLS.Coefficients method) (proteus.mprans.NCLS3P.Coefficients method) (proteus.TransportCoefficients.NCLevelSetCoefficients method) nd (in module proteus.default_p) (proteus.BoundaryConditions.BC_Base attribute) (proteus.mbd.CouplingFSI.ProtChBody attribute) (proteus.mbd.CouplingFSI.ProtChMoorings attribute) nDOF_global (proteus.FemTools.FiniteElementFunction attribute) nDTout (in module proteus.default_n) nearest_node_array (proteus.mbd.CouplingFSI.ProtChMoorings attribute) newEdge() (proteus.MeshTools.EdgeMesh method) newPlot() (in module proteus.Viewers) newQuadrilateral() (proteus.MeshTools.QuadrilateralMesh method) newTetrahedron() (proteus.MeshTools.TetrahedralMesh method) Newton (class in proteus.NonlinearSolvers) Newton_controller (class in proteus.mprans.MCorr) (class in proteus.mprans.MCorr3P) (class in proteus.StepControl) NewtonNS (class in proteus.NonlinearSolvers) NewtonWithL2ProjectionForMassCorrection (class in proteus.NonlinearSolvers)

newTriangle() (proteus.MeshTools.TriangularMesh method) NewWave (class in proteus.WaveTools) newWindow() (in module proteus.Viewers) next_sample (proteus.mbd.CouplingFSI.ProtChSystem attribute) NF_base (class in proteus.NumericalFlux) NI (class in proteus.LinearSolvers) nl_atol_res (in module proteus.default_n) nLevels (in module proteus.default_n) NLGaussSeidel (class in proteus.NonlinearSolvers) nList (proteus.NumericalSolution.NS_base attribute) NLJacobi (class in proteus.NonlinearSolvers) NLNI (class in proteus.NonlinearSolvers) NLStarILU (class in proteus.NonlinearSolvers) nltol_u (in module proteus.default_n) nn (in module proteus.default_n) nnx (in module proteus.default_n) nny (in module proteus.default_n) nnz (in module proteus.default_n) no_solve() (proteus.NonlinearSolvers.ExplicitLumpedMassMatrix method) NodalDOFMap (class in proteus.FemTools) NodalInterpolationConditions (class in proteus.FemTools) Node (class in proteus.MeshTools) node (proteus.MeshTools.MeshParallelPartitioningTypes attribute) nodes (proteus.mbd.CouplingFSI.ProtChMoorings attribute) nodes_built (proteus.mbd.CouplingFSI.ProtChMoorings attribute) nodes_function (proteus.mbd.CouplingFSI.ProtChMoorings attribute) nodes_function_tangent (proteus.mbd.CouplingFSI.ProtChMoorings attribute) nodes_nb (proteus.mbd.CouplingFSI.ProtChMoorings attribute) NoFlux (class in proteus.NumericalFlux) NoIntegration (in module proteus.TimeIntegration) NonlinearAD_SteadyState (class in proteus.AnalyticalSolutions) NonlinearADR_Decay_DiracIC (class in proteus.AnalyticalSolutions) nonlinearADR_pqrstEvaluate() (proteus.TransportCoefficients.NonlinearVADR_pqrst method) (proteus.TransportCoefficients.NonlinearVADR_pqrst_full method) NonlinearDAE (class in proteus.AnalyticalSolutions) NonlinearEquation (class in proteus.NonlinearSolvers) nonlinearSmoother (in module proteus.default_n) NonlinearSolver (class in proteus.NonlinearSolvers) nonlinearSolverNorm() (in module proteus.default_n) NonlinearVADR_pqrst (class in proteus.TransportCoefficients) NonlinearVADR_pqrst_full (class in proteus.TransportCoefficients) NoNullSpace (in module proteus.LinearSolvers) norm() (in module proteus.EGeometry) (proteus.LinearAlgebraTools.WeightedNorm method) (proteus.NonlinearSolvers.NonlinearSolver method) (proteus.NonlinearSolvers.POD_DEIM_Newton method) (proteus.NonlinearSolvers.POD_Newton method) normIntegral() (in module proteus.WaveTools) notSetVal (proteus.SimTools.SimulationProcessor attribute) NS_base (class in proteus.NumericalSolution) nStagesTime (in module proteus.default_n) NumericalFlux (class in proteus.mprans.AddedMass) (class in proteus.mprans.CLSVOF) (class in proteus.mprans.Dissipation) (class in proteus.mprans.GN_SW2DCV) (class in proteus.mprans.Kappa) (class in proteus.mprans.NCLS) (class in proteus.mprans.NCLS3P) (class in proteus.mprans.Pres) (class in proteus.mprans.PresInc) (class in proteus.mprans.RANS2P) (class in proteus.mprans.RANS3PF) (class in proteus.mprans.RANS3PSed) (class in proteus.mprans.SW2D) (class in proteus.mprans.SW2DCV) (class in proteus.mprans.VOF) (class in proteus.mprans.VOF3P) (class in proteus.mprans.VOS3P) (in module proteus.ADR) NumericalFlux_IIPG (class in proteus.ADR) NumericalFlux_NIPG (class in proteus.ADR) NumericalFlux_SIPG (class in proteus.ADR) numericalFluxType (in module proteus.default_n) Numerics_base (class in proteus.defaults) NURBSMesh (class in proteus.MeshTools)

O

ObjectiveFunction_base (class in proteus.Optimizers) omega (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) onElement() (proteus.FemTools.ReferenceCube method) (proteus.FemTools.ReferenceElement method) (proteus.FemTools.ReferenceSimplex method) OneLevelTransport (class in proteus.Transport) open() (proteus.LatexReport.LatexResultsSummary method) openLatexReport() (in module proteus.LatexReport) openLog() (in module proteus.Profiling) OperatorConstructor (class in proteus.LinearSolvers) OperatorConstructor_oneLevel (class in proteus.LinearSolvers) OperatorConstructor_rans2p (class in proteus.LinearSolvers) OperatorShell (class in proteus.LinearAlgebraTools)

Options() (in module proteus.Context) opts (proteus.NumericalSolution.NS_base attribute) orientation (proteus.mprans.BoundaryConditions.RelaxationZone attribute) Osher_controller (class in proteus.StepControl) Osher_PsiTC_controller (class in proteus.StepControl) Osher_PsiTC_controller2 (class in proteus.StepControl) OsherFunc (class in proteus.ObjectiveFunctions) OsherFuncCoef (class in proteus.ObjectiveFunctions) OuterTheta (class in proteus.TimeIntegration) outputHeader() (proteus.Gauges.Gauges method) outputRow() (proteus.Gauges.Gauges method) OutputStepping (class in proteus.SWFlow.SWFlowProblem) (class in proteus.TwoPhaseFlow.TwoPhaseFlowProblem) overturning_module() (proteus.mprans.BodyDynamics.CaissonBody method) owning_rank (proteus.mbd.CouplingFSI.ProtChMoorings attribute)

P

p0 (class in proteus.FemTools) p0DOFMap (class in proteus.FemTools) p0InterpolationConditions (class in proteus.FemTools) P1 (in module proteus.FemTools) P1BubbleDOFMap (class in proteus.FemTools) P1BubbleInterpolationConditions (class in proteus.FemTools) P1BubblesWithNodalBasis (class in proteus.FemTools) P1P0BubbleInterpolationConditions (class in proteus.FemTools) P1P0BubblesWithNodalBasis (class in proteus.FemTools) P2 (in module proteus.FemTools) p2tetrahedronLocalBoundaryLookup (proteus.FemTools.QuadraticLagrangeNodalInterpolationConditions attribute) p_advective (proteus.mprans.BoundaryConditions.BC_RANS attribute) p_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) p_to_v() (proteus.AnalyticalSolutions.AS_base method) pAddedMass_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) PaddleBody (class in proteus.mprans.BodyDynamics) par_dof (proteus.FemTools.FiniteElementFunction attribute) ParametersHolder (class in proteus.TwoPhaseFlow.utils.Parameters) ParametersModelAddedMass (class in proteus.TwoPhaseFlow.utils.Parameters) ParametersModelBase (class in proteus.TwoPhaseFlow.utils.Parameters) ParametersModelCLSVOF (class in proteus.TwoPhaseFlow.utils.Parameters) ParametersModelDissipation (class in proteus.TwoPhaseFlow.utils.Parameters) ParametersModelKappa (class in proteus.TwoPhaseFlow.utils.Parameters) ParametersModelMCorr (class in proteus.TwoPhaseFlow.utils.Parameters) ParametersModelMoveMeshElastic (class in proteus.TwoPhaseFlow.utils.Parameters) ParametersModelMoveMeshMonitor (class in proteus.TwoPhaseFlow.utils.Parameters) ParametersModelNCLS (class in proteus.TwoPhaseFlow.utils.Parameters) ParametersModelPressure (class in proteus.TwoPhaseFlow.utils.Parameters) ParametersModelPressureIncrement (class in proteus.TwoPhaseFlow.utils.Parameters) ParametersModelPressureInitial (class in proteus.TwoPhaseFlow.utils.Parameters) ParametersModelRANS2P (class in proteus.TwoPhaseFlow.utils.Parameters) ParametersModelRANS3PF (class in proteus.TwoPhaseFlow.utils.Parameters) ParametersModelRDLS (class in proteus.TwoPhaseFlow.utils.Parameters) ParametersModelVOF (class in proteus.TwoPhaseFlow.utils.Parameters) ParametricFiniteElementSpace (class in proteus.FemTools) ParametricMaps (class in proteus.FemTools) ParInfo_petsc4py (class in proteus.LinearAlgebraTools) ParMat_petsc4py (class in proteus.LinearAlgebraTools) partitionMesh() (proteus.MeshTools.Mesh method) partitionMeshFromFiles() (proteus.MeshTools.Mesh method) ParVec_petsc4py (class in proteus.LinearAlgebraTools) periodicDirichletConditions (in module proteus.default_p) petsc4py_get_rank() (in module proteus.LinearAlgebraTools) petsc4py_mat_has_pressure_null_space() (in module proteus.LinearAlgebraTools) petsc4py_sparse_2_dense() (in module proteus.LinearAlgebraTools) petsc_ASM (class in proteus.LinearSolvers) petsc_create_diagonal_inv_matrix() (in module proteus.LinearAlgebraTools) petsc_load_IS() (in module proteus.LinearAlgebraTools) petsc_load_matrix() (in module proteus.LinearAlgebraTools) petsc_load_vector() (in module proteus.LinearAlgebraTools) petsc_LU (class in proteus.LinearSolvers) phi (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) phi() (proteus.StepControl.GustafssonFullNewton_dt_controller method) phi_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) Physics_base (class in proteus.defaults) PicardNewton (class in proteus.NonlinearSolvers) pickle (proteus.LatexReport.LatexResultsSummary attribute) PiecewiseLinearComplexDomain (class in proteus.Domain) piecewiseLinearTableLookup() (proteus.InputTranslators.ADH_metfile method) pInc_advective (proteus.mprans.BoundaryConditions.BC_RANS attribute) pInc_diffusive (proteus.mprans.BoundaryConditions.BC_RANS attribute) pInc_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) pInit_advective (proteus.mprans.BoundaryConditions.BC_RANS attribute) pInit_diffusive (proteus.mprans.BoundaryConditions.BC_RANS attribute) pInit_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) PlanarStraightLineGraphDomain (class in proteus.Domain) PlaneBase (class in proteus.AnalyticalSolutions) PlaneCouetteFlow_p (class in proteus.AnalyticalSolutions) PlaneCouetteFlow_u (class in proteus.AnalyticalSolutions) PlaneCouetteFlow_u() (proteus.AnalyticalSolutions.PlaneCouetteFlow_u method) PlaneCouetteFlow_v (class in proteus.AnalyticalSolutions) PlanePoiseuilleFlow_p (class in proteus.AnalyticalSolutions) PlanePoiseuilleFlow_p2 (class in proteus.AnalyticalSolutions) PlanePoiseuilleFlow_u (class in proteus.AnalyticalSolutions) PlanePoiseuilleFlow_u() (proteus.AnalyticalSolutions.PlanePoiseuilleFlow_u method) PlanePoiseuilleFlow_u2 (class in proteus.AnalyticalSolutions) PlanePoiseuilleFlow_v (class in proteus.AnalyticalSolutions) PlanePoiseuilleFlow_v2 (class in proteus.AnalyticalSolutions) PlanePoiseuilleFlow_w2 (class in proteus.AnalyticalSolutions) pList (proteus.NumericalSolution.NS_base attribute) plotCoefficientFunctions() (proteus.TransportCoefficients.TC_base method) plotNumber() (proteus.Viewers.V_base method) PlotOptions (proteus.SimTools.SimulationProcessor attribute) PlotQuantities (proteus.SimTools.SimulationProcessor attribute) plotScalarElementQuantity() (proteus.Viewers.V_base method) plotScalarElementQuantityEnsight() (proteus.SimTools.SimulationProcessor method) plotScalarGlobalElementBoundaryQuantityEnsight() (proteus.SimTools.SimulationProcessor method) PlotTimes (proteus.SimTools.SimulationProcessor attribute) plotVectorElementQuantity() (proteus.Viewers.V_base method) plotVectorElementQuantityEnsight() (proteus.SimTools.SimulationProcessor method) plotVectorGlobalElementBoundaryQuantity() (proteus.Viewers.V_base method) plotVectorGlobalElementBoundaryQuantityEnsight() (proteus.SimTools.SimulationProcessor method) PM_mod() (in module proteus.WaveTools) POD_DEIM_Newton (class in proteus.NonlinearSolvers) POD_Newton (class in proteus.NonlinearSolvers) PointGauges() (in module proteus.Gauges) PointMesh (class in proteus.MeshTools) PoissonEquationCoefficients (class in proteus.TransportCoefficients) PoissonsEquation (class in proteus.AnalyticalSolutions) polyfile (in module proteus.default_p) Polygon (class in proteus.MeshTools) Polyhedron (class in proteus.MeshTools) porosity (proteus.mprans.BoundaryConditions.RelaxationZone attribute) position (proteus.mbd.CouplingFSI.ProtChBody attribute) position_last (proteus.mbd.CouplingFSI.ProtChBody attribute) postAdaptStep() (proteus.mprans.MCorr.Coefficients method) postAdaptUpdate() (proteus.TimeIntegration.BackwardEuler_cfl method) (proteus.TimeIntegration.TI_base method) (proteus.TimeIntegration.VBDF method) postprocess() (proteus.PostProcessingTools.AggregateVelocityPostProcessor method) (proteus.PostProcessingTools.VelocityPostProcessingAlgorithmBase method) (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.SimTools.SimulationProcessor method) (proteus.Viewers.V_base method) postprocess_component() (proteus.PostProcessingTools.VelocityPostProcessingAlgorithmBase method) (proteus.PostProcessingTools.VPP_DG_RT0 method) (proteus.PostProcessingTools.VPP_LOW_K_IB_PWL_RT0 method) (proteus.PostProcessingTools.VPP_P1nc_RT0 method) (proteus.PostProcessingTools.VPP_POINT_EVAL method) (proteus.PostProcessingTools.VPP_POINT_EVAL_GWVD method) (proteus.PostProcessingTools.VPP_PWC_RT0 method) (proteus.PostProcessingTools.VPP_PWL_RT0 method) (proteus.PostProcessingTools.VPP_PWL_RT0_OPT method) (proteus.PostProcessingTools.VPP_PWL_RT1 method) (proteus.PostProcessingTools.VPP_SUN_GS_RT0 method) (proteus.PostProcessingTools.VPP_SUN_RT0 method) postprocessDG() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) postprocessP1nc() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) postprocessPointEval() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) postprocessPWC() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) postprocessPWL() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) postprocessPWL_opt() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) postProcessRT0potentialFromP1nc() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_P1nc_RT0 method) postProcessRT0potentialFromP1nc_sd() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_P1nc_RT0 method) postProcessRT0velocityFromP1nc() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_P1nc_RT0 method) postProcessRT0velocityFromP1nc_sd() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_P1nc_RT0 method) postprocessSunWheeler() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) postStep() (proteus.elastoplastic.ElastoPlastic.Coefficients method) poststep() (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.mbd.CouplingFSI.ProtChMoorings method) postStep() (proteus.mprans.AddedMass.Coefficients method) (proteus.mprans.CLSVOF.Coefficients method) (proteus.mprans.Dissipation.Coefficients method) (proteus.mprans.GN_SW2DCV.Coefficients method) (proteus.mprans.Kappa.Coefficients method) (proteus.mprans.MCorr.Coefficients method) (proteus.mprans.MCorr3P.Coefficients method) (proteus.mprans.MoveMesh.Coefficients method) (proteus.mprans.MoveMesh.LevelModel method) (proteus.mprans.MoveMeshMonitor.Coefficients method) (proteus.mprans.NCLS.Coefficients method) (proteus.mprans.NCLS3P.Coefficients method) (proteus.mprans.Pres.Coefficients method) (proteus.mprans.PresInc.Coefficients method) (proteus.mprans.PresInit.Coefficients method) (proteus.mprans.RANS2P.Coefficients method) (proteus.mprans.RANS2P_IB.Coefficients method) (proteus.mprans.RANS3PF.Coefficients method) (proteus.mprans.RANS3PSed.Coefficients method) (proteus.mprans.RDLS.Coefficients method) (proteus.mprans.SW2DCV.Coefficients method) (proteus.mprans.VOF.Coefficients method) (proteus.mprans.VOF3P.Coefficients method) (proteus.mprans.VOS3P.Coefficients method) (proteus.NumericalSolution.NS_base method) (proteus.TransportCoefficients.CLevelSetCoefficients method) (proteus.TransportCoefficients.LevelSetConservation method) (proteus.TransportCoefficients.MovingMesh method) (proteus.TransportCoefficients.NCLevelSetCoefficients method) (proteus.TransportCoefficients.RedistanceLevelSet method) (proteus.TransportCoefficients.TC_base method) (proteus.TransportCoefficients.VOFCoefficients method) predicted (proteus.mbd.CouplingFSI.ProtChBody attribute) prediction (proteus.mbd.CouplingFSI.ProtChSystem attribute) prediction() (proteus.mbd.CouplingFSI.ProtChBody method) prepare() (proteus.LinearSolvers.GaussSeidel method) (proteus.LinearSolvers.Jacobi method) (proteus.LinearSolvers.KSP_petsc4py method) (proteus.LinearSolvers.LinearSolver method) (proteus.LinearSolvers.LU method) (proteus.LinearSolvers.MGM method) (proteus.LinearSolvers.NI method) (proteus.LinearSolvers.StarBILU method) (proteus.LinearSolvers.StarILU method) (proteus.LinearSolvers.TwoLevel method) prepareSubdomains() (proteus.NonlinearSolvers.NLStarILU method) preprocess() (proteus.SimTools.SimulationProcessor method) (proteus.Viewers.V_base method) prescribed_motion_function (proteus.mbd.CouplingFSI.ProtChBody attribute) PressurePressureIncompressibleFractionalFlowPressureMualemVanGenuchten (class in proteus.SubsurfaceTransportCoefficients) PressurePressureIncompressibleFractionalFlowSaturationMualemVanGenuchten (class in proteus.SubsurfaceTransportCoefficients) PressureProfile (class in proteus.AuxiliaryVariables) pressureToHeight() (in module proteus.AnalysisTools) preStep() (proteus.elastoplastic.ElastoPlastic.Coefficients method) prestep() (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.mbd.CouplingFSI.ProtChMoorings method) preStep() (proteus.mprans.AddedMass.Coefficients method) (proteus.mprans.CLSVOF.Coefficients method) (proteus.mprans.Dissipation.Coefficients method) (proteus.mprans.GN_SW2DCV.Coefficients method) (proteus.mprans.Kappa.Coefficients method) (proteus.mprans.MCorr.Coefficients method) (proteus.mprans.MCorr3P.Coefficients method) (proteus.mprans.MoveMesh.Coefficients method) (proteus.mprans.MoveMesh.LevelModel method) (proteus.mprans.MoveMeshMonitor.Coefficients method) (proteus.mprans.NCLS.Coefficients method) (proteus.mprans.NCLS3P.Coefficients method) (proteus.mprans.Pres.Coefficients method) (proteus.mprans.PresInc.Coefficients method) (proteus.mprans.PresInit.Coefficients method) (proteus.mprans.RANS2P.Coefficients method) (proteus.mprans.RANS3PF.Coefficients method) (proteus.mprans.RANS3PSed.Coefficients method) (proteus.mprans.RDLS.Coefficients method) (proteus.mprans.SW2DCV.Coefficients method) (proteus.mprans.VOF.Coefficients method) (proteus.mprans.VOF3P.Coefficients method) (proteus.mprans.VOS3P.Coefficients method) (proteus.NumericalSolution.NS_base method) (proteus.SubsurfaceTransportCoefficients.IncompressibleFractionalFlowSaturationMualemVanGenuchtenSplitAdvDiff method) (proteus.TransportCoefficients.CLevelSetCoefficients method) (proteus.TransportCoefficients.LevelSetConservation method) (proteus.TransportCoefficients.NCLevelSetCoefficients method) (proteus.TransportCoefficients.RedistanceLevelSet method) (proteus.TransportCoefficients.TC_base method) (proteus.TransportCoefficients.TwophaseReynoldsAveragedNavierStokes_AlgebraicClosure method) (proteus.TransportCoefficients.VOFCoefficients method) (proteus.TransportCoefficients.VolumeAveragedTwophaseNavierStokes method) print_info() (proteus.LinearAlgebraTools.ParInfo_petsc4py method) print_petsc_commandline_options() (in module proteus.Profiling) printOut() (proteus.WaveTools.RandomWavesFast method) printPerformance() (proteus.LinearSolvers.LinearSolver method) processTimeLevel() (proteus.SimTools.SimulationProcessor method) (proteus.Viewers.V_base method) ProductOperatorShell (class in proteus.LinearAlgebraTools) profile_function() (proteus.Profiling.Dispatcher method) ProfilingDtor() (in module proteus.Profiling) project_disc_ICs() (proteus.NonlinearSolvers.CLSVOFNewton method) projectFiniteElementFunctionFromInterpolationConditions_opt (proteus.FemTools.InterpolationConditions attribute) projectFiniteElementFunctionFromInterpolationConditions_opt() (proteus.FemTools.FaceBarycenterInterpolationConditions method) (proteus.FemTools.NodalInterpolationConditions method) (proteus.FemTools.QuadraticLagrangeCubeNodalInterpolationConditions method) (proteus.FemTools.QuadraticLagrangeNodalInterpolationConditions method) projectFromInterpolationConditions() (proteus.FemTools.FiniteElementFunction method) projectFromLimitedSpace() (proteus.TimeIntegration.DGlimiterP2Lagrange1d method) (proteus.TimeIntegration.DGlimiterP2Lagrange2d method) (proteus.TimeIntegration.DGlimiterPkMonomial1d method) (proteus.TimeIntegration.DGlimiterPkMonomial2d method) projectToFinestLevel() (in module proteus.SimTools) projectToLimitedSpace() (proteus.TimeIntegration.DGlimiterP2Lagrange1d method) (proteus.TimeIntegration.DGlimiterP2Lagrange2d method) (proteus.TimeIntegration.DGlimiterPkMonomial1d method) (proteus.TimeIntegration.DGlimiterPkMonomial2d method) projectVelocityToFinestLevelNC() (in module proteus.SimTools) ProtChAddedMass (class in proteus.mbd.CouplingFSI) (proteus.mbd.CouplingFSI.ProtChSystem attribute) ProtChBody (class in proteus.mbd.CouplingFSI) ProtChMesh (class in proteus.mbd.CouplingFSI) ProtChMoorings (class in proteus.mbd.CouplingFSI)

ProtChSystem (class in proteus.mbd.CouplingFSI) (proteus.mbd.CouplingFSI.ProtChAddedMass attribute) (proteus.mbd.CouplingFSI.ProtChBody attribute) (proteus.mbd.CouplingFSI.ProtChMesh attribute) (proteus.mbd.CouplingFSI.ProtChMoorings attribute) proteus module proteus.ADR module proteus.AnalysisTools module proteus.AnalyticalSolutions module proteus.Archiver module proteus.AuxiliaryVariables module proteus.BoundaryConditions module proteus.canalyticalSolutions module proteus.cfemIntegrals module proteus.clapack module proteus.cmeshTools module proteus.cnumericalFlux module proteus.Comm module proteus.Context module proteus.cpartitioning module proteus.cpostprocessing module proteus.cpskRelations module proteus.cshockCapturing module proteus.csmoothers module proteus.csparsity module proteus.csubgridError module proteus.cSubsurfaceTransportCoefficients module proteus.ctimeIntegration module proteus.ctransportCoefficients module proteus.cTwophaseDarcyCoefficients module proteus.default_n module proteus.default_p module proteus.default_s module proteus.default_so module proteus.defaults module proteus.deim_utils module proteus.DiagUtils module proteus.Domain module proteus.EGeometry module proteus.elastoplastic module proteus.elastoplastic.ElastoPlastic module proteus.equivalent_polynomials module proteus.ErrorEstimators module proteus.FemTools module proteus.fenton module proteus.fenton.Fenton module proteus.flcbdfWrappers module proteus.Gauges module proteus.InputTranslators module proteus.iproteus module proteus.Isosurface module proteus.LatexReport module proteus.LinearAlgebraTools module proteus.LinearSolvers module proteus.mbd module proteus.mbd.CouplingFSI module proteus.MeshAdaptPUMI module proteus.MeshAdaptPUMI.AdaptHelper module proteus.MeshAdaptPUMI.Checkpoint module proteus.MeshAdaptPUMI.MeshAdapt module proteus.MeshTools module proteus.mprans module proteus.mprans.AddedMass module proteus.mprans.ArchiveBeams module proteus.mprans.beamFEM module proteus.mprans.BodyDynamics module proteus.mprans.BoundaryConditions module proteus.mprans.CLSVOF module proteus.mprans.cMoveMeshMonitor module proteus.mprans.Dissipation module proteus.mprans.GN_SW2DCV module proteus.mprans.Kappa module proteus.mprans.MCorr module proteus.mprans.MCorr3P module proteus.mprans.MeshSmoothing module proteus.mprans.MoveMesh module proteus.mprans.MoveMeshMonitor module proteus.mprans.NCLS module proteus.mprans.NCLS3P module proteus.mprans.Pres module proteus.mprans.PresInc module proteus.mprans.PresInit module proteus.mprans.RANS2P module proteus.mprans.RANS2P_IB module proteus.mprans.RANS3PF module proteus.mprans.RANS3PSed module proteus.mprans.RDLS module proteus.mprans.SpatialTools module proteus.mprans.SW2D module proteus.mprans.SW2DCV module proteus.mprans.VOF module proteus.mprans.VOF3P module proteus.mprans.VOS3P module proteus.NonlinearSolvers module proteus.Norms module proteus.NumericalFlux module proteus.NumericalSolution module proteus.ObjectiveFunctions module proteus.Optimizers module proteus.PostProcessingTools module proteus.Profiling module proteus.Quadrature module proteus.RefUtils module proteus.richards module proteus.richards.Richards module proteus.ShockCapturing module proteus.SimTools module proteus.SpatialTools module proteus.SplitOperator module proteus.StepControl module proteus.SubgridError module proteus.SubsurfaceTransportCoefficients module proteus.subsurfaceTransportFunctions module proteus.superluWrappers module proteus.SWFlow module proteus.SWFlow.SWFlowProblem module proteus.SWFlow.utils module proteus.TimeIntegration module proteus.Transport module proteus.TransportCoefficients module proteus.TwophaseDarcyCoefficients module proteus.TwoPhaseFlow module proteus.TwoPhaseFlow.TwoPhaseFlowProblem module proteus.TwoPhaseFlow.utils module proteus.TwoPhaseFlow.utils.Parameters module proteus.Viewers module proteus.WaveTools module pruneDuplicateSegments() (proteus.Gauges.Gauges method) PsiTC (class in proteus.mprans.RDLS) PsiTCtte (class in proteus.TimeIntegration) PsiTCtte_controller (class in proteus.StepControl) PsiTCtte_new (class in proteus.TimeIntegration) psiTCtteDT() (proteus.TimeIntegration.PsiTCtte method) (proteus.TimeIntegration.PsiTCtte_new method) PT123velocityGenerator (class in proteus.AuxiliaryVariables) PUMI2Proteus() (proteus.MeshAdaptPUMI.AdaptHelper.PUMI_helper method) PUMI_adaptMesh() (proteus.MeshAdaptPUMI.AdaptHelper.PUMI_helper method) PUMI_estimateError() (proteus.MeshAdaptPUMI.AdaptHelper.PUMI_helper method) PUMI_helper (class in proteus.MeshAdaptPUMI.AdaptHelper) PUMI_reallocate() (proteus.MeshAdaptPUMI.AdaptHelper.PUMI_helper method) PUMI_recomputeStructures() (proteus.MeshAdaptPUMI.AdaptHelper.PUMI_helper method) PUMI_transferFields() (proteus.MeshAdaptPUMI.AdaptHelper.PUMI_helper method) PUMIDomain (class in proteus.Domain)

Q

Q1 (in module proteus.FemTools) Q2 (in module proteus.FemTools) q2hexahedronLocalBoundaryLookup (proteus.FemTools.QuadraticLagrangeCubeNodalInterpolationConditions attribute) q2quadrilateralLocalBoundaryLookup (proteus.FemTools.QuadraticLagrangeCubeNodalInterpolationConditions attribute) Q_base (class in proteus.Quadrature) QuadraticLagrangeCubeDOFMap (class in proteus.FemTools) QuadraticLagrangeCubeNodalInterpolationConditions (class in proteus.FemTools) QuadraticLagrangeDOFMap (class in proteus.FemTools) QuadraticLagrangeNodalInterpolationConditions (class in proteus.FemTools) QuadraticOnSimplexWithNodalBasis (class in proteus.FemTools) Quadrature (proteus.FemTools.MonomialInterpolationConditions attribute) (proteus.FemTools.p0InterpolationConditions attribute) (proteus.FemTools.P1P0BubbleInterpolationConditions attribute)

quadrature2DOF_element() (proteus.FemTools.InterpolationConditions method) (proteus.FemTools.MonomialInterpolationConditions method) (proteus.FemTools.p0InterpolationConditions method) (proteus.FemTools.P1P0BubbleInterpolationConditions method) quadrature2Node_element() (proteus.FemTools.InterpolationConditions method) (proteus.FemTools.NodalInterpolationConditions method) (proteus.FemTools.P1BubbleInterpolationConditions method) (proteus.FemTools.QuadraticLagrangeCubeNodalInterpolationConditions method) (proteus.FemTools.QuadraticLagrangeNodalInterpolationConditions method) Quadrilateral (class in proteus.MeshTools) QuadrilateralGrid (class in proteus.MeshTools) quadrilateralLocalBoundaryLookup (proteus.FemTools.CubeNodalInterpolationConditions attribute) QuadrilateralMesh (class in proteus.MeshTools)

R

radiusIBM (proteus.mbd.CouplingFSI.ProtChBody attribute) RandomNLWaves (class in proteus.WaveTools) RandomNLWavesFast (class in proteus.WaveTools) RandomWaves (class in proteus.WaveTools) RandomWavesFast (class in proteus.WaveTools) rank() (proteus.Comm.Comm method) RE_NCP1_OneLevelTransport (class in proteus.SubsurfaceTransportCoefficients) reactionLumping (in module proteus.default_n) read_from_hdf5() (in module proteus.deim_utils) read_snapshots() (in module proteus.deim_utils) readFunctionXdmf() (proteus.FemTools.C0_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineQuadraticOnSimplexWithNodalBasis method) readMeshADH() (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method) readMeshXdmf() (in module proteus.MeshTools) readMixedElementTopologyFromXdmf() (in module proteus.MeshTools) readPoly() (proteus.Domain.PiecewiseLinearComplexDomain method) (proteus.Domain.PlanarStraightLineGraphDomain method) readProbeFile() (in module proteus.AnalysisTools) readPTS() (proteus.TransportCoefficients.ThreephaseNavierStokes_ST_LS_SO method) readSTL() (proteus.Domain.TriangulatedSurfaceDomain method) readUniformElementTopologyFromXdmf() (in module proteus.MeshTools) RecirculationLength (class in proteus.AuxiliaryVariables) reconstructMesh() (proteus.MeshAdaptPUMI.AdaptHelper.PUMI_helper method) record_dict (proteus.mbd.CouplingFSI.ProtChBody attribute) record_file (proteus.mbd.CouplingFSI.ProtChBody attribute) (proteus.mbd.CouplingFSI.ProtChMoorings attribute) record_values (proteus.mbd.CouplingFSI.ProtChSystem attribute) recordStrainEta() (proteus.mbd.CouplingFSI.ProtChMoorings method) Rectangle (class in proteus.SpatialTools) RectangularDomain (class in proteus.Domain) RectangularGrid (class in proteus.MeshTools) rectangularToEdge() (proteus.MeshTools.EdgeMesh method) rectangularToQuadrilateral() (proteus.MeshTools.QuadrilateralMesh method) rectangularToTetrahedral() (proteus.MeshTools.TetrahedralMesh method) rectangularToTetrahedral5T() (proteus.MeshTools.TetrahedralMesh method) rectangularToTetrahedral6T() (proteus.MeshTools.TetrahedralMesh method) rectangularToTriangular() (proteus.MeshTools.TriangularMesh method) rectangularToTriangularOriented() (proteus.MeshTools.TriangularMesh method) rectangularToTriangularOrientedOtherWay() (proteus.MeshTools.TriangularMesh method) rectangularToTriangularRedBlack() (proteus.MeshTools.TriangularMesh method) redistance_disc_ICs() (proteus.NonlinearSolvers.CLSVOFNewton method) RedistanceLevelSet (class in proteus.TransportCoefficients) redistanceLevelSetCoefficientsEvaluate() (proteus.mprans.RDLS.Coefficients method) (proteus.TransportCoefficients.RedistanceLevelSet method) redistanceLevelSetCoefficientsWithWeakPenaltyEvaluate() (proteus.TransportCoefficients.RedistanceLevelSetWithWeakPenalty method) RedistanceLevelSetSandF (class in proteus.TransportCoefficients) redistanceLevelSetSandFCoefficientsEvaluate() (proteus.TransportCoefficients.RedistanceLevelSetSandF method) RedistanceLevelSetWithWeakPenalty (class in proteus.TransportCoefficients) reduceOrder() (proteus.mprans.beamFEM.FEMTools method) reduceToIntervals() (in module proteus.WaveTools) ReferenceCube (class in proteus.FemTools) ReferenceElement (class in proteus.FemTools) ReferenceFiniteElement (class in proteus.FemTools) ReferenceSimplex (class in proteus.FemTools) refine() (proteus.MeshTools.EdgeMesh method) (proteus.MeshTools.MultilevelEdgeMesh method) (proteus.MeshTools.MultilevelHexahedralMesh method) (proteus.MeshTools.MultilevelMesh method) (proteus.MeshTools.MultilevelNURBSMesh method) (proteus.MeshTools.MultilevelQuadrilateralMesh method) (proteus.MeshTools.MultilevelRectangularGrid method) (proteus.MeshTools.MultilevelSimplicialMesh method) (proteus.MeshTools.MultilevelTetrahedralMesh method) (proteus.MeshTools.MultilevelTriangularMesh method) (proteus.MeshTools.QuadrilateralMesh method) (proteus.MeshTools.RectangularGrid method) (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method) refine2e() (proteus.MeshTools.EdgeMesh method) refine3t() (proteus.MeshTools.TriangularMesh method) refine4T() (proteus.MeshTools.TetrahedralMesh method) refineFreudenthalBey() (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method) ReflStat() (in module proteus.AnalysisTools) registerEdges() (proteus.MeshTools.HexahedralMesh method) (proteus.MeshTools.QuadrilateralMesh method) (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method) registerFaces() (proteus.MeshTools.HexahedralMesh method) registerNode() (proteus.MeshTools.EdgeMesh method) (proteus.MeshTools.HexahedralMesh method) (proteus.MeshTools.QuadrilateralMesh method) (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method) registerTriangles() (proteus.MeshTools.TetrahedralMesh method) RelaxationZone (class in proteus.mprans.BoundaryConditions) RelaxationZoneWaveGenerator (class in proteus.mprans.BoundaryConditions) removeBoundaryFluxesFromResidual() (proteus.PostProcessingTools.VelocityPostProcessingAlgorithmBase method) (proteus.PostProcessingTools.VelocityPostProcessor_Original method) reraise() (in module proteus.defaults) reset() (proteus.mprans.BoundaryConditions.BC_RANS method) reset_default_n() (in module proteus.defaults) reset_default_p() (in module proteus.defaults)

reset_default_so() (in module proteus.defaults) resetBC() (proteus.BoundaryConditions.BoundaryCondition method) resetFactorization() (proteus.NonlinearSolvers.SSPRKNewton method) resetNonlinearFunctionStatistics() (proteus.NonlinearSolvers.NonlinearEquation method) resetOrder() (proteus.mprans.GN_SW2DCV.RKEV method) (proteus.mprans.NCLS.RKEV method) (proteus.mprans.SW2DCV.RKEV method) (proteus.mprans.VOF.RKEV method) (proteus.mprans.VOF3P.RKEV method) (proteus.mprans.VOS3P.RKEV method) (proteus.TimeIntegration.ExplicitRK_base method) resetSolution() (proteus.StepControl.SC_base method) resetTimeHistory() (proteus.TimeIntegration.PsiTCtte_new method) (proteus.TimeIntegration.TI_base method) ResGrad_SC (class in proteus.ShockCapturing) ResGradDelayLag_SC (class in proteus.ShockCapturing) ResGradFFDarcy_SC (class in proteus.ShockCapturing) ResGradFFDarcyDelayLag_SC (class in proteus.ShockCapturing) ResGradJuanes_SC (class in proteus.ShockCapturing) ResGradQuad_SC (class in proteus.ShockCapturing) ResGradQuadDelayLag_SC (class in proteus.ShockCapturing) restrictFromFineMesh() (proteus.NumericalSolution.NS_base method) retryModelStep_errorFailure() (proteus.SplitOperator.ISO_fixed_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep_SS method) (proteus.SplitOperator.Sequential_MinFLCBDFModelStep method) (proteus.SplitOperator.SO_base method) retryModelStep_solverFailure() (proteus.SplitOperator.ISO_fixed_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep_SS method) (proteus.SplitOperator.Sequential_MinFLCBDFModelStep method) (proteus.SplitOperator.SO_base method) retrySequence_modelStepFailure() (proteus.SplitOperator.ISO_fixed_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep_SS method) (proteus.SplitOperator.Sequential_MinFLCBDFModelStep method) (proteus.SplitOperator.SO_base method) retryStep_errorFailure() (proteus.StepControl.FLCBDF_controller method) (proteus.StepControl.FLCBDF_controller_sys method) (proteus.StepControl.GustafssonFullNewton_dt_controller method) (proteus.StepControl.HeuristicNL_dt_controller method) (proteus.StepControl.Min_dt_controller_FCT method) (proteus.StepControl.Newton_controller method) (proteus.StepControl.SC_base method) retryStep_solverFailure() (proteus.StepControl.FLCBDF_controller method) (proteus.StepControl.FLCBDF_controller_sys method) (proteus.StepControl.GustafssonFullNewton_dt_controller method) (proteus.StepControl.HeuristicNL_dt_controller method) (proteus.StepControl.Newton_controller method) (proteus.StepControl.SC_base method) returnRectangles() (in module proteus.WaveTools) returnRectangles3D() (in module proteus.WaveTools) revertToFixedIteration() (proteus.LinearSolvers.NI method) (proteus.NonlinearSolvers.NLNI method) ReynoldsAveragedNavierStokes_AlgebraicClosure (class in proteus.TransportCoefficients) ReynoldsAveragedNavierStokes_kEpsilon (class in proteus.TransportCoefficients) ReynoldsAveragedNavierStokes_kEpsilon_2D_Update() (proteus.TransportCoefficients.ReynoldsAveragedNavierStokes_kEpsilon method) ReynoldsAveragedNavierStokes_kEpsilon_2D_Update_sd() (proteus.TransportCoefficients.ReynoldsAveragedNavierStokes_kEpsilon method) Richards_IIPG_exterior (class in proteus.NumericalFlux) Richards_SIPG_exterior (class in proteus.NumericalFlux) RigidBody (class in proteus.mprans.BodyDynamics) RKEV (class in proteus.mprans.GN_SW2DCV) (class in proteus.mprans.NCLS) (class in proteus.mprans.SW2DCV) (class in proteus.mprans.VOF) (class in proteus.mprans.VOF3P) (class in proteus.mprans.VOS3P) rmsNorm() (in module proteus.LinearAlgebraTools) rOfUX() (proteus.AnalyticalSolutions.AS_base method) (proteus.AnalyticalSolutions.LinearADR_Sine method) (proteus.AnalyticalSolutions.PoissonsEquation method) rOfUXT() (proteus.AnalyticalSolutions.LinearADR_Decay_DiracIC method) (proteus.AnalyticalSolutions.NonlinearADR_Decay_DiracIC method) rotate() (proteus.SpatialTools.Shape method) RotatingVelocityLevelSet (class in proteus.TransportCoefficients) rotation2D() (in module proteus.SpatialTools) rotation3D() (in module proteus.SpatialTools) rotation_init (proteus.mbd.CouplingFSI.ProtChBody attribute) rotm (proteus.mbd.CouplingFSI.ProtChBody attribute) rotm_last (proteus.mbd.CouplingFSI.ProtChBody attribute) rotq (proteus.mbd.CouplingFSI.ProtChBody attribute) rotq_last (proteus.mbd.CouplingFSI.ProtChBody attribute) rtol_res (in module proteus.default_n) rtol_u (in module proteus.default_n) runAtEOS() (proteus.mprans.CLSVOF.LevelModel method) (proteus.mprans.RDLS.LevelModel method) runCFL (in module proteus.default_n) runge_kutta() (in module proteus.mprans.BodyDynamics) runTetgen() (in module proteus.MeshTools) runTriangle() (in module proteus.MeshTools) RusanovLDG (class in proteus.NumericalFlux) RusanovNumericalFlux (class in proteus.NumericalFlux) RusanovNumericalFlux_Diagonal (class in proteus.NumericalFlux) RusanovNumericalFlux_Diagonal_Diffusion_IIPG (class in proteus.NumericalFlux)

S

sampleRate (proteus.mbd.CouplingFSI.ProtChSystem attribute) save() (proteus.LinearAlgebraTools.ParMat_petsc4py method) (proteus.LinearAlgebraTools.ParVec_petsc4py method) saveMesh() (proteus.MeshAdaptPUMI.Checkpoint.Checkpointer method) saveSolution() (proteus.StepControl.GustafssonFullNewton_dt_controller method) (proteus.StepControl.HeuristicNL_dt_controller method) (proteus.StepControl.SC_base method) (proteus.Transport.OneLevelTransport method) saveToDisk() (proteus.SimTools.SimulationProcessor method) SC_base (class in proteus.StepControl) ScalarAdvection_SC (class in proteus.ShockCapturing) scalarDomainIntegral() (in module proteus.Norms) scalarHeavisideDomainIntegral() (in module proteus.Norms) scalarSmoothedHeavisideDomainIntegral() (in module proteus.Norms) scatter_forward_insert() (proteus.LinearAlgebraTools.ParVec_petsc4py method) scatter_reverse_add() (proteus.LinearAlgebraTools.ParVec_petsc4py method) scheme (proteus.mbd.CouplingFSI.ProtChSystem attribute) Schur_LSC (class in proteus.LinearSolvers) Schur_Qp (class in proteus.LinearSolvers) Schur_Sp (class in proteus.LinearSolvers) SchurOperatorConstructor (class in proteus.LinearSolvers) SchurPrecon (class in proteus.LinearSolvers) sd (in module proteus.default_p) sdfIBM (proteus.mbd.CouplingFSI.ProtChBody attribute) SeepageBrezis (class in proteus.TransportCoefficients) seepageBrezis() (proteus.TransportCoefficients.SeepageBrezis method) sequenceStepTaken() (proteus.SplitOperator.ISO_fixed_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep_SS method) (proteus.SplitOperator.Sequential_MinFLCBDFModelStep method) (proteus.SplitOperator.SO_base method) sequenceTaken() (proteus.SplitOperator.ISO_fixed_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep_SS method) (proteus.SplitOperator.Sequential_MinFLCBDFModelStep method) (proteus.SplitOperator.Sequential_NonUniformFixedStep method) (proteus.SplitOperator.SO_base method) Sequential_FixedStep (in module proteus.SplitOperator) Sequential_FixedStep_Simple (in module proteus.SplitOperator) Sequential_MinAdaptiveModelStep (class in proteus.SplitOperator) Sequential_MinAdaptiveModelStep_SS (class in proteus.SplitOperator) Sequential_MinFLCBDFModelStep (class in proteus.SplitOperator) Sequential_MinModelStep (class in proteus.SplitOperator) Sequential_NonUniformFixedStep (class in proteus.SplitOperator) Sequential_tnList (class in proteus.SplitOperator) SequentialNotInOrder_MinAdaptiveModelStep (class in proteus.SplitOperator) SequentialNotInOrder_MinFLCBDFModelStep (class in proteus.SplitOperator) set() (in module proteus.Context) set_BDM_dimensions() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) set_dof_order_type() (proteus.LinearSolvers.ModelInfo method) set_dt() (proteus.TimeIntegration.ExplicitRK_base method) (proteus.TimeIntegration.FLCBDF method) (proteus.TimeIntegration.TI_base method) set_dt_allLevels() (proteus.StepControl.FLCBDF_controller method) (proteus.StepControl.GustafssonFullNewton_dt_controller method) (proteus.StepControl.SC_base method) set_model_info() (proteus.LinearSolvers.DofOrderInfo method) set_num_components() (proteus.LinearSolvers.ModelInfo method) set_velocity_var_names() (proteus.LinearSolvers.SchurPrecon method) setAbsorptionZones() (proteus.mprans.SpatialTools.ShapeRANS method) (proteus.mprans.SpatialTools.Tank2D method) (proteus.mprans.SpatialTools.Tank3D method) (proteus.mprans.SpatialTools.TankWithObstacles2D method) setAddedMass() (proteus.mbd.CouplingFSI.ProtChBody method) setAddedMassCoefficients() (proteus.mbd.CouplingFSI.ProtChMoorings method) setApplyAddedMass() (proteus.mbd.CouplingFSI.ProtChMoorings method) setApplyBuoyancy() (proteus.mbd.CouplingFSI.ProtChMoorings method) setApplyDrag() (proteus.mbd.CouplingFSI.ProtChMoorings method) setAtmosphere() (proteus.mprans.BoundaryConditions.BC_RANS method) setBarycenter() (proteus.SpatialTools.Shape method) setBCs() (proteus.mprans.beamFEM.FEMTools method) setBoundaryFlags() (proteus.mbd.CouplingFSI.ProtChBody method) setChildShape() (proteus.SpatialTools.Shape method) setChMoveMesh() (proteus.mprans.BoundaryConditions.BC_RANS method) setCoefficients() (proteus.mprans.GN_SW2DCV.RKEV method) (proteus.mprans.NCLS.RKEV method) (proteus.mprans.SW2DCV.RKEV method) (proteus.mprans.VOF.RKEV method) (proteus.mprans.VOF3P.RKEV method) (proteus.mprans.VOS3P.RKEV method) (proteus.TimeIntegration.ExplicitRK_base method) (proteus.TimeIntegration.LinearSSPRKintegration method) (proteus.TimeIntegration.SSPRKPIintegration method) setCollisionEnvelopeMargin() (proteus.mbd.CouplingFSI.ProtChSystem method) setCollisionOptions() (proteus.mbd.CouplingFSI.ProtChBody method) setConstantBC() (proteus.BoundaryConditions.BoundaryCondition method) setConstantInletVelocity() (proteus.mprans.BoundaryConditions.BC_RANS method) setConstantOutletPressure() (proteus.mprans.BoundaryConditions.BC_RANS method) setConstraints() (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.mprans.BodyDynamics.RigidBody method) setContactMaterial() (proteus.mbd.CouplingFSI.ProtChMoorings method) setCouplingScheme() (proteus.mbd.CouplingFSI.ProtChSystem method) setDefaults() (proteus.TwoPhaseFlow.TwoPhaseFlowProblem.SystemPhysics method) setDimensions() (proteus.mprans.SpatialTools.Tank3D method) (proteus.SpatialTools.Cuboid method) (proteus.SpatialTools.Rectangle method) setDirichletValues() (proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.Advection_DiagonalUpwind_IIPG_exterior method) (proteus.NumericalFlux.ConstantAdvection_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.ConstantAdvection_exterior method) (proteus.NumericalFlux.DoNothing method) (proteus.NumericalFlux.HamiltonJacobi_DiagonalLesaintRaviart method) (proteus.NumericalFlux.HamiltonJacobi_DiagonalLesaintRaviart_Diffusion_SIPG_exterior method) (proteus.NumericalFlux.MixedDarcy_exterior method) (proteus.NumericalFlux.NavierStokes_Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.Richards_IIPG_exterior method) (proteus.NumericalFlux.ShallowWater_2D method) (proteus.NumericalFlux.Stress_IIPG_exterior method) setDirVector() (in module proteus.WaveTools) setDragCoefficients() (proteus.mbd.CouplingFSI.ProtChMoorings method) setEdgeFlags() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) setElementSize() (proteus.MeshTools.MeshOptions method) setExternalForces() (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.mbd.CouplingFSI.ProtChMoorings method) setFESpace() (proteus.TwoPhaseFlow.TwoPhaseFlowProblem.FESpace method) setFixedNodes() (proteus.mprans.BoundaryConditions.BC_RANS method) setFluidAccelerationAtNodes() (proteus.mbd.CouplingFSI.ProtChMoorings method) setFluidDensityAtNodes() (proteus.mbd.CouplingFSI.ProtChMoorings method) setFluidVelocityAtNodes() (proteus.mbd.CouplingFSI.ProtChMoorings method) setFluidVelocityFunction() (proteus.mbd.CouplingFSI.ProtChMoorings method) setFluxBoundaryConditions() (proteus.NumericalFlux.StrongDirichlet method) setFreeDOF() (proteus.Transport.OneLevelTransport method) setFreeSlip() (proteus.mprans.BoundaryConditions.BC_RANS method) setFriction() (proteus.mprans.BodyDynamics.CaissonBody method) setFromModule() (in module proteus.Context) setFromOptions() (proteus.mprans.GN_SW2DCV.RKEV method) (proteus.mprans.NCLS.RKEV method) (proteus.mprans.SW2DCV.RKEV method) (proteus.mprans.VOF.RKEV method) (proteus.mprans.VOF3P.RKEV method) (proteus.mprans.VOS3P.RKEV method) (proteus.NumericalFlux.NF_base method) (proteus.SplitOperator.SO_base method) (proteus.TimeIntegration.BackwardEuler_cfl method) (proteus.TimeIntegration.DGlimiterDurlofskyP1Lagrange2d method) (proteus.TimeIntegration.DGlimiterDurlofskyP1Lagrange2d_Sw method) (proteus.TimeIntegration.DGlimiterDurlofskyP1Lagrange3d method) (proteus.TimeIntegration.DGlimiterP1Lagrange1d method) (proteus.TimeIntegration.DGlimiterP1Lagrange1d_Sw method) (proteus.TimeIntegration.DGlimiterP1Lagrange2d method) (proteus.TimeIntegration.DGlimiterP2Lagrange1d method) (proteus.TimeIntegration.DGlimiterP2Lagrange1d_Sw method) (proteus.TimeIntegration.DGlimiterP2Lagrange2d method) (proteus.TimeIntegration.DGlimiterPkMonomial1d method) (proteus.TimeIntegration.DGlimiterPkMonomial1d_Sw method) (proteus.TimeIntegration.DGlimiterPkMonomial2d method) (proteus.TimeIntegration.ExplicitRK_base method) (proteus.TimeIntegration.ForwardEuler method) (proteus.TimeIntegration.ForwardEuler_A method) (proteus.TimeIntegration.ForwardEuler_H method) (proteus.TimeIntegration.LinearSSPRKintegration method) (proteus.TimeIntegration.LinearSSPRKPIintegration method) (proteus.TimeIntegration.OuterTheta method) (proteus.TimeIntegration.PsiTCtte method) (proteus.TimeIntegration.PsiTCtte_new method) (proteus.TimeIntegration.SSPRKPIintegration method) (proteus.TimeIntegration.TI_base method) (proteus.TimeIntegration.UnstructuredLimiter_base method) (proteus.TimeIntegration.VBDF method) setGenerationZones() (proteus.mprans.SpatialTools.ShapeRANS method) (proteus.mprans.SpatialTools.Tank2D method) (proteus.mprans.SpatialTools.Tank3D method) (proteus.mprans.SpatialTools.TankWithObstacles2D method) setGravitationalAcceleration() (proteus.mbd.CouplingFSI.ProtChSystem method) setGridCollectionAndGridElements() (proteus.Archiver.XdmfWriter method) setHoles() (proteus.SpatialTools.Shape method) setHydrostaticPressureOutletWithDepth() (proteus.mprans.BoundaryConditions.BC_RANS method) setIBM() (proteus.mbd.CouplingFSI.ProtChBody method) setInertiaTensor() (proteus.mprans.BodyDynamics.RigidBody method) setInertiaXX() (proteus.mbd.CouplingFSI.ProtChBody method) setInertiaXY() (proteus.mbd.CouplingFSI.ProtChBody method) setInflowFlux() (proteus.Transport.OneLevelTransport method) setInitialConditions() (proteus.Transport.MultilevelTransport method) (proteus.Transport.OneLevelTransport method) setInitialConditionsFromDofs() (proteus.Transport.MultilevelTransport method) (proteus.Transport.OneLevelTransport method) setInitialConditionsTPF() (proteus.Transport.OneLevelTransport method) setInitialConditionStructure() (proteus.TwoPhaseFlow.utils.Parameters.ParametersModelBase method) setInitialGuess() (proteus.StepControl.FLCBDF_controller method) (proteus.StepControl.GustafssonFullNewton_dt_controller method) (proteus.StepControl.HeuristicNL_dt_controller method) (proteus.StepControl.Min_dt_controller_FCT method) (proteus.StepControl.PsiTCtte_controller method) (proteus.StepControl.SC_base method) (proteus.TimeIntegration.TI_base method) (proteus.TimeIntegration.VBDF method) setInitialRot() (proteus.mbd.CouplingFSI.ProtChBody method) setInitialStageValues() (proteus.TimeIntegration.ExplicitRK_base method) (proteus.TimeIntegration.FLCBDF method) (proteus.TimeIntegration.ForwardEuler_H method) (proteus.TimeIntegration.TI_base method) setInteriorFluxBoundaries() (proteus.PostProcessingTools.VPP_LOW_K_IB_PWL_RT0 method) setInteriorFluxBoundaryValues() (proteus.PostProcessingTools.VPP_LOW_K_IB_PWL_RT0 method) setInteriorTestSpace() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) setInteriorVelocityValues() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) setIyy() (proteus.mbd.CouplingFSI.ProtChMoorings method) setLastSolveFailed() (proteus.TimeIntegration.TI_base method) setLinearBC() (proteus.BoundaryConditions.BoundaryCondition method) setLinearRamp() (proteus.BoundaryConditions.BoundaryCondition method) setLinearSolverTolerance() (proteus.NonlinearSolvers.Newton method) (proteus.NonlinearSolvers.NewtonNS method) setMass() (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.mprans.BodyDynamics.RigidBody method) setMassQuadrature() (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) setMassQuadratureEdgeBasedStabilizationMethods() (proteus.mprans.MCorr.LevelModel method) setMaterialFunction() (proteus.TwophaseDarcyCoefficients.TwophaseDarcyFlow_base method) setMaterialTypes() (proteus.SubsurfaceTransportCoefficients.TwophaseDarcyFlow_base method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcyFlow_base method) setMeshBathymetry() (proteus.MeshTools.InterpolatedBathymetryMesh method) setMeshBathymetry_interpolate() (proteus.MeshTools.InterpolatedBathymetryMesh method) setMeshBathymetry_localAveraging() (proteus.MeshTools.InterpolatedBathymetryMesh method) setMeshGenerator() (proteus.MeshTools.MeshOptions method) setMinimumSubsteps() (proteus.mbd.CouplingFSI.ProtChSystem method) setMoveMesh() (proteus.mprans.BoundaryConditions.BC_RANS method) setName() (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.mbd.CouplingFSI.ProtChMoorings method) setNodesPosition() (proteus.mbd.CouplingFSI.ProtChMoorings method) setNodesPositionFunction() (proteus.mbd.CouplingFSI.ProtChMoorings method) setNonMaterial() (proteus.mprans.BoundaryConditions.BC_RANS method) setNoSlip() (proteus.mprans.BoundaryConditions.BC_RANS method) setNumericalScheme() (proteus.mprans.BodyDynamics.CaissonBody method) (proteus.mprans.BodyDynamics.RigidBody method) setOrder() (proteus.Quadrature.CompositeTrapezoidalEdge method) (proteus.Quadrature.CompositeTrapezoidalTriangle method) (proteus.Quadrature.CubeGaussQuadrature method) (proteus.Quadrature.FaceBarycenterEdge method) (proteus.Quadrature.FaceBarycenterTetrahedron method) (proteus.Quadrature.FaceBarycenterTriangle method) (proteus.Quadrature.GaussEdge method) (proteus.Quadrature.GaussPoint method) (proteus.Quadrature.LobattoTetrahedron method) (proteus.Quadrature.LobattoTriangle method) (proteus.Quadrature.Q_base method) (proteus.Quadrature.SimplexGaussQuadrature method) (proteus.Quadrature.SimplexLobattoQuadrature method) setOutputFiles() (proteus.MeshTools.MeshOptions method) setOutputStepping() (proteus.TwoPhaseFlow.TwoPhaseFlowProblem.OutputStepping method) setOverturning() (proteus.mprans.BodyDynamics.CaissonBody method) setParallelPartitioningType() (proteus.MeshTools.MeshOptions method) setParentShape() (proteus.SpatialTools.Shape method) setPivot() (proteus.mprans.BodyDynamics.RigidBody method) setPorousZones() (proteus.mprans.SpatialTools.ShapeRANS method) setPosition() (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.SpatialTools.Shape method) setPrescribedMotion() (proteus.mbd.CouplingFSI.ProtChBody method) setPrescribedMotionCustom() (proteus.mbd.CouplingFSI.ProtChBody method) setPrescribedMotionPoly() (proteus.mbd.CouplingFSI.ProtChBody method) setPrescribedMotionSine() (proteus.mbd.CouplingFSI.ProtChBody method) setProperties() (proteus.MeshAdaptPUMI.AdaptHelper.PUMI_helper method) setRecordValues() (proteus.mbd.CouplingFSI.ProtChBody method) (proteus.mprans.BodyDynamics.CaissonBody method) (proteus.mprans.BodyDynamics.RigidBody method) setRegions() (proteus.SpatialTools.Shape method) setRestLengthPerElement() (proteus.mbd.CouplingFSI.ProtChMoorings method) setResTol() (proteus.LinearSolvers.KSP_petsc4py method) (proteus.LinearSolvers.LinearSolver method) (proteus.LinearSolvers.NI method) setRigidBodyMoveMesh() (proteus.mprans.BoundaryConditions.BC_RANS method) setSampleRate() (proteus.mbd.CouplingFSI.ProtChSystem method)

setSponge() (proteus.mprans.SpatialTools.Tank2D method) (proteus.mprans.SpatialTools.Tank3D method) setSprings() (proteus.mprans.BodyDynamics.CaissonBody method) (proteus.mprans.BodyDynamics.RigidBody method) setSubsteps() (proteus.StepControl.Min_dt_controller method) (proteus.StepControl.Min_dt_RKcontroller method) (proteus.StepControl.SC_base method) setTank() (proteus.mprans.BoundaryConditions.BC_RANS method) (proteus.mprans.SpatialTools.ShapeRANS method) setTimeStep() (proteus.mbd.CouplingFSI.ProtChSystem method) setTimestepperType() (proteus.mbd.CouplingFSI.ProtChSystem method) setTriangleOptions() (proteus.MeshTools.MeshOptions method) setTurbulentDirichlet() (proteus.mprans.BoundaryConditions.BC_RANS method) setTurbulentKWall() (proteus.mprans.SpatialTools.ShapeRANS method) setTurbulentWall() (proteus.mprans.SpatialTools.ShapeRANS method) setTurbulentZeroGradient() (proteus.mprans.BoundaryConditions.BC_RANS method) setTwoPhaseVelocityInlet() (proteus.mprans.BoundaryConditions.BC_RANS method) setUnknowns() (proteus.Transport.OneLevelTransport method) setUnsteadyTwoPhaseVelocityInlet() (proteus.mprans.BoundaryConditions.BC_RANS method) setup() (proteus.LinearSolvers.KSP_Preconditioner method) setUp() (proteus.LinearSolvers.LinearSolver method) (proteus.LinearSolvers.NavierStokes2D method) (proteus.LinearSolvers.NavierStokes3D method) (proteus.LinearSolvers.NavierStokes_TwoPhasePCD method) (proteus.LinearSolvers.NavierStokesPressureCorrection method) (proteus.LinearSolvers.petsc_ASM method) (proteus.LinearSolvers.petsc_LU method) (proteus.LinearSolvers.Schur_LSC method) (proteus.LinearSolvers.Schur_Qp method) (proteus.LinearSolvers.Schur_Sp method) (proteus.LinearSolvers.SchurPrecon method) (proteus.LinearSolvers.SimpleDarcyFC method) setupFieldStrides() (proteus.Transport.OneLevelTransport method) setupParallelCommunication() (proteus.FemTools.FiniteElementFunction method) setVelocity() (proteus.mbd.CouplingFSI.ProtChBody method) setVertDir() (in module proteus.WaveTools) setWallFunction() (proteus.mprans.BoundaryConditions.BC_RANS method) setWeakDirichletConditions() (proteus.NumericalSolution.NS_base method) setWeight() (proteus.LinearAlgebraTools.WeightedNorm method) setWidth2D() (proteus.mbd.CouplingFSI.ProtChBody method) setYplusNormalDirection() (proteus.mprans.BoundaryConditions.WallFunctions method) setZeroLSweakDirichletBCs() (in module proteus.mprans.RDLS) (proteus.mprans.RDLS.Coefficients static method) (proteus.TransportCoefficients.RedistanceLevelSet static method) setZeroLSweakDirichletBCs2() (proteus.mprans.RDLS.Coefficients static method) (proteus.TransportCoefficients.RedistanceLevelSet static method) setZeroLSweakDirichletBCs3() (proteus.mprans.RDLS.Coefficients static method) (proteus.TransportCoefficients.RedistanceLevelSet static method) setZeroLSweakDirichletBCsSimple() (in module proteus.mprans.RDLS) SGE_base (class in proteus.SubgridError) ShallowWater (class in proteus.TransportCoefficients) ShallowWater_1D (class in proteus.NumericalFlux) shallowWater_1D_Evaluate() (proteus.TransportCoefficients.ShallowWater method) ShallowWater_2D (class in proteus.NumericalFlux) shallowWater_2D_Evaluate() (proteus.TransportCoefficients.ShallowWater method) ShallowWater_CFL (class in proteus.SubgridError) ShallowWaterHLL_1D (class in proteus.NumericalFlux) Shape (class in proteus.SpatialTools) (proteus.BoundaryConditions.BC_Base attribute) (proteus.mbd.CouplingFSI.ProtChBody attribute) (proteus.mprans.BoundaryConditions.RelaxationZone attribute) ShapeRANS (class in proteus.mprans.SpatialTools) ShapeSTL (class in proteus.SpatialTools) ShockCapturing (class in proteus.ADR) (class in proteus.mprans.Dissipation) (class in proteus.mprans.Kappa) (class in proteus.mprans.NCLS) (class in proteus.mprans.NCLS3P) (class in proteus.mprans.RANS2P) (class in proteus.mprans.RANS3PF) (class in proteus.mprans.RANS3PSed) (class in proteus.mprans.RDLS) (class in proteus.mprans.SW2D) (class in proteus.mprans.VOF) (class in proteus.mprans.VOF3P) (class in proteus.mprans.VOS3P) shockCapturing (in module proteus.default_n) ShockCapturing_base (class in proteus.ShockCapturing) Si_Jm (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) sigma() (in module proteus.WaveTools) sigmaBasisElement() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) signalFilter() (in module proteus.AnalysisTools) signedDistance() (proteus.TransportCoefficients.ThreephaseNavierStokes_ST_LS_SO method) SignedDistanceIntegrator (class in proteus.TimeIntegration) SimpelFunc (class in proteus.ObjectiveFunctions) SimpelFunc2 (class in proteus.ObjectiveFunctions) SimpelFunc3 (class in proteus.ObjectiveFunctions) SimpleDarcyFC (class in proteus.LinearSolvers) SimpleNavierStokes2D (in module proteus.LinearSolvers) SimpleNavierStokes3D (in module proteus.LinearSolvers) SimplexGaussQuadrature (class in proteus.Quadrature) SimplexLobattoQuadrature (class in proteus.Quadrature) SimulationProcessor (class in proteus.SimTools) SinglePhaseDarcyCoefficients (class in proteus.SubsurfaceTransportCoefficients) sinhkzd_test() (in module proteus.WaveTools) size() (proteus.Comm.Comm method) SkewStabilization_1 (class in proteus.SubgridError) skipSpinupOnHotstart (in module proteus.default_so) so (proteus.NumericalSolution.NS_base attribute) SO_base (class in proteus.SplitOperator) SolitaryWave (class in proteus.WaveTools) SolutionDataStorageData (proteus.SimTools.SimulationProcessor attribute) solve() (proteus.LinearSolvers.GaussSeidel method) (proteus.LinearSolvers.Jacobi method) (proteus.LinearSolvers.KSP_petsc4py method) (proteus.LinearSolvers.LinearSolver method) (proteus.LinearSolvers.LU method) (proteus.LinearSolvers.MGM method) (proteus.LinearSolvers.NI method) (proteus.LinearSolvers.StarBILU method) (proteus.LinearSolvers.StarILU method) (proteus.LinearSolvers.TwoLevel method) (proteus.mprans.MCorr.DummyNewton method) (proteus.mprans.MCorr.ElementConstantNewton method) (proteus.mprans.MCorr.ElementNewton method) (proteus.mprans.MCorr.GlobalConstantNewton method) (proteus.mprans.MCorr3P.DummyNewton method) (proteus.mprans.MCorr3P.ElementConstantNewton method) (proteus.mprans.MCorr3P.ElementNewton method) (proteus.mprans.MCorr3P.GlobalConstantNewton method) (proteus.NonlinearSolvers.AddedMassNewton method) (proteus.NonlinearSolvers.CLSVOFNewton method) (proteus.NonlinearSolvers.ExplicitConsistentMassMatrixForVOF method) (proteus.NonlinearSolvers.ExplicitConsistentMassMatrixShallowWaterEquationsSolver method) (proteus.NonlinearSolvers.ExplicitConsistentMassMatrixWithRedistancing method) (proteus.NonlinearSolvers.ExplicitLumpedMassMatrix method) (proteus.NonlinearSolvers.ExplicitLumpedMassMatrixShallowWaterEquationsSolver method) (proteus.NonlinearSolvers.FAS method) (proteus.NonlinearSolvers.FasTwoLevel method) (proteus.NonlinearSolvers.MoveMeshMonitorNewton method) (proteus.NonlinearSolvers.Newton method) (proteus.NonlinearSolvers.NewtonNS method) (proteus.NonlinearSolvers.NewtonWithL2ProjectionForMassCorrection method) (proteus.NonlinearSolvers.NLGaussSeidel method) (proteus.NonlinearSolvers.NLJacobi method) (proteus.NonlinearSolvers.NLNI method) (proteus.NonlinearSolvers.NLStarILU method) (proteus.NonlinearSolvers.PicardNewton method) (proteus.NonlinearSolvers.POD_DEIM_Newton method) (proteus.NonlinearSolvers.POD_Newton method) (proteus.NonlinearSolvers.SSPRKNewton method) (proteus.NonlinearSolvers.TwoStageNewton method) (proteus.Optimizers.fminbound method) solveDEIM() (proteus.NonlinearSolvers.POD_DEIM_Newton method) solveInitialize() (proteus.LinearSolvers.LinearSolver method) (proteus.NonlinearSolvers.NonlinearSolver method) (proteus.NonlinearSolvers.POD_DEIM_Newton method) solveLocalBDM1projection() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_PWL_BDM method) (proteus.PostProcessingTools.VPP_PWL_BDM_OPT method) solveLocalBDM1projectionFromFlux() (proteus.PostProcessingTools.VPP_DG_BDM method) solveLocalBDM2projection() (proteus.PostProcessingTools.VPP_PWL_BDM2 method) solveMultilevel() (proteus.LinearSolvers.NI method) (proteus.NonlinearSolvers.MultilevelNonlinearSolver method) (proteus.NonlinearSolvers.NLNI method) solveOldMethod() (proteus.NonlinearSolvers.CLSVOFNewton method) SolverNullSpace (class in proteus.LinearSolvers) sortNodes() (proteus.MeshTools.Quadrilateral method) SparseMat() (in module proteus.LinearAlgebraTools) SparseMatFromDict() (in module proteus.LinearAlgebraTools) SparseMatShell (class in proteus.LinearAlgebraTools) Sphere (class in proteus.SpatialTools) spinup_for_disc_ICs() (proteus.NonlinearSolvers.CLSVOFNewton method) spinUpStep() (proteus.NonlinearSolvers.CLSVOFNewton method) SpInv_shell (class in proteus.LinearAlgebraTools) split_PETSc_Mat() (in module proteus.LinearAlgebraTools) SSP (class in proteus.TimeIntegration) SSPRKNewton (class in proteus.NonlinearSolvers) SSPRKPIintegration (class in proteus.TimeIntegration) StarBILU (class in proteus.LinearSolvers) StarILU (class in proteus.LinearSolvers) SteadyCurrent (class in proteus.WaveTools) SteadyState (class in proteus.AnalyticalSolutions) SteadyStateIntegrator (class in proteus.TimeIntegration) step() (proteus.mbd.CouplingFSI.ProtChSystem method) (proteus.mprans.BodyDynamics.CaissonBody method) (proteus.mprans.BodyDynamics.PaddleBody method) (proteus.mprans.BodyDynamics.RigidBody method) step_nb (proteus.mbd.CouplingFSI.ProtChSystem attribute) step_start (proteus.mbd.CouplingFSI.ProtChSystem attribute) stepController (in module proteus.default_n) stepExact_model() (proteus.mprans.RDLS.PsiTC method) (proteus.StepControl.GustafssonFullNewton_dt_controller method) (proteus.StepControl.Min_dt_RKcontroller method) (proteus.StepControl.Osher_controller method) (proteus.StepControl.Osher_PsiTC_controller method) (proteus.StepControl.Osher_PsiTC_controller2 method) (proteus.StepControl.PsiTCtte_controller method) (proteus.StepControl.SC_base method) stepExact_system() (proteus.SplitOperator.ISO_fixed_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep method) (proteus.SplitOperator.Sequential_MinAdaptiveModelStep_SS method) (proteus.SplitOperator.Sequential_MinFLCBDFModelStep method) (proteus.SplitOperator.Sequential_MinModelStep method) (proteus.SplitOperator.Sequential_NonUniformFixedStep method) (proteus.SplitOperator.Sequential_tnList method) (proteus.SplitOperator.SequentialNotInOrder_MinAdaptiveModelStep method) (proteus.SplitOperator.SequentialNotInOrder_MinFLCBDFModelStep method) (proteus.SplitOperator.SO_base method) stepPlotElementQuantities() (proteus.Viewers.V_base method) stepPlotElementQuantitiesEnsight() (proteus.SimTools.SimulationProcessor method) stepPlotEnsight() (proteus.SimTools.SimulationProcessor method) stepPlotExact() (proteus.Viewers.V_base method) stepProcessError() (proteus.SimTools.SimulationProcessor method) stepProcessPlot() (proteus.Viewers.V_base method) stepStoreQuantities() (proteus.SimTools.SimulationProcessor method) Stokes (class in proteus.TransportCoefficients) Stokes_2D_Evaluate() (proteus.TransportCoefficients.Stokes method) Stokes_3D_Evaluate() (proteus.TransportCoefficients.Stokes method) Stokes_Advection_DiagonalUpwind_Diffusion_IIPG_exterior (class in proteus.NumericalFlux) Stokes_Advection_DiagonalUpwind_Diffusion_SIPG_exterior (class in proteus.NumericalFlux) StokesASGS_velocity (class in proteus.SubgridError) StokesASGS_velocity_pressure (class in proteus.SubgridError) StokesP (class in proteus.TransportCoefficients) StokesP_2D_Evaluate() (proteus.TransportCoefficients.StokesP method) StokesP_3D_Evaluate() (proteus.TransportCoefficients.StokesP method) StokesP_Advection_DiagonalUpwind_Diffusion_IIPG_exterior (class in proteus.NumericalFlux) StokesStabilization_1 (class in proteus.SubgridError) StorageSet (class in proteus.LinearSolvers) (class in proteus.Transport) storePointMeshData() (proteus.Viewers.MatlabWriter method) StoreQuantities (proteus.SimTools.SimulationProcessor attribute) StoreTimes (proteus.SimTools.SimulationProcessor attribute) storeValues() (proteus.mbd.CouplingFSI.ProtChBody method) Stress_IIPG_exterior (class in proteus.NumericalFlux) Stress_SIPG_exterior (class in proteus.NumericalFlux) StressBoundaryConditions (class in proteus.FemTools) stressFluxBoundaryConditions (in module proteus.default_p) StrongDirichlet (class in proteus.NumericalFlux) StrongDirichletFactory() (in module proteus.NumericalFlux) structuredMesh() (proteus.mprans.beamFEM.FEMTools method) subcomponents (proteus.mbd.CouplingFSI.ProtChSystem attribute) SubgridError (class in proteus.ADR) (class in proteus.mprans.Dissipation) (class in proteus.mprans.Kappa) (class in proteus.mprans.NCLS) (class in proteus.mprans.NCLS3P) (class in proteus.mprans.RANS2P) (class in proteus.mprans.RANS3PF) (class in proteus.mprans.RANS3PSed) (class in proteus.mprans.RDLS) (class in proteus.mprans.SW2D) (class in proteus.mprans.VOF) (class in proteus.mprans.VOF3P) (class in proteus.mprans.VOS3P) subgridError (in module proteus.default_n) superlu_2_petsc4py() (in module proteus.LinearAlgebraTools) superlu_get_rank() (in module proteus.LinearAlgebraTools) superlu_has_pressure_null_space() (in module proteus.LinearAlgebraTools) superlu_sparse_2_dense() (in module proteus.LinearAlgebraTools) SWFlowProblem (class in proteus.SWFlow.SWFlowProblem) switchToResidualConvergence() (proteus.LinearSolvers.NI method) (proteus.NonlinearSolvers.NLNI method) sync() (proteus.Archiver.AR_base method) SysNorm() (proteus.SplitOperator.SO_base method) System (class in proteus.SplitOperator) System_base (class in proteus.defaults) SystemNumerics (class in proteus.TwoPhaseFlow.TwoPhaseFlowProblem) SystemPhysics (class in proteus.TwoPhaseFlow.TwoPhaseFlowProblem)

T

T (in module proteus.default_p) tagElements() (proteus.MeshTools.InterpolatedBathymetryMesh method) tangentialVelocity() (proteus.mprans.BoundaryConditions.WallFunctions method) tanhF (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) Tank2D (class in proteus.mprans.SpatialTools) Tank3D (class in proteus.mprans.SpatialTools) TankWithObstacles2D (class in proteus.mprans.SpatialTools) TC_base (class in proteus.TransportCoefficients) tCount (proteus.mbd.CouplingFSI.ProtChMoorings attribute) (proteus.mbd.CouplingFSI.ProtChSystem attribute) tCount_value (proteus.mbd.CouplingFSI.ProtChMoorings attribute) tenvec() (in module proteus.EGeometry) testBarycentricCoords() (in module proteus.RefUtils) testCrRavNodalBasis() (in module proteus.DiagUtils) testEdgeDOFMap() (in module proteus.DiagUtils) testQuadDOFMap() (in module proteus.DiagUtils) testQuadNodalBasis() (in module proteus.DiagUtils) testQuadRefMats() (in module proteus.DiagUtils) TetrahedralMesh (class in proteus.MeshTools) Tetrahedron (class in proteus.MeshTools) tetrahedronVerticesToNormals() (in module proteus.MeshTools) tfocus (proteus.WaveTools.NewWave attribute) ThreephaseNavierStokes_ST_LS_SO (class in proteus.TransportCoefficients) ThreephaseNavierStokes_ST_LS_SO_2D_Evaluate() (proteus.TransportCoefficients.ThreephaseNavierStokes_ST_LS_SO method) ThreephaseNavierStokes_ST_LS_SO_3D_Evaluate() (proteus.TransportCoefficients.ThreephaseNavierStokes_ST_LS_SO method) TI_base (class in proteus.TimeIntegration) timeIntegration (in module proteus.default_n) TimeIntegration (proteus.mprans.GN_SW2DCV.RKEV attribute) (proteus.mprans.SW2DCV.RKEV attribute) (proteus.mprans.VOF.RKEV attribute) (proteus.mprans.VOF3P.RKEV attribute) (proteus.mprans.VOS3P.RKEV attribute) timeIntegrator (in module proteus.default_n) timeOrder (in module proteus.default_n) TimeSeries (class in proteus.WaveTools) Tlag (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) tophat() (in module proteus.WaveTools) totalFluxOfX() (proteus.AnalyticalSolutions.AS_base method) (proteus.AnalyticalSolutions.LinearADR_Sine method) totalFluxOfXT() (proteus.AnalyticalSolutions.LinearAD_DiracIC method) Tp (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) trans() (in module proteus.EGeometry) transferInfo() (proteus.MeshAdaptPUMI.Checkpoint.Checkpointer method) translate() (proteus.SpatialTools.Shape method) Triangle (class in proteus.MeshTools) triangleFlag (in module proteus.default_n) triangleMap (proteus.MeshTools.Tetrahedron attribute) triangleOptions (in module proteus.default_n) triangleVerticesToNormals() (in module proteus.MeshTools) TriangularMesh (class in proteus.MeshTools) TriangulatedSurfaceDomain (class in proteus.Domain) TVseminormSFEM() (in module proteus.Norms) TwoLevel (class in proteus.LinearSolvers) TwoPhase_PCDInv_shell (class in proteus.LinearAlgebraTools) TwoPhaseAdvection_2D_Evaluate() (proteus.TransportCoefficients.DiscreteTwoPhaseAdvectionOperator method) TwophaseDarcy_compressible_split_pressure (class in proteus.SubsurfaceTransportCoefficients) TwophaseDarcy_compressible_split_saturation (class in proteus.SubsurfaceTransportCoefficients) twophaseDarcy_compressibleN_split_sd_pressure_het_matType() (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_compressible_split_pressure method)

twophaseDarcy_compressibleN_split_sd_saturation_het_matType() (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_compressible_split_saturation method) TwophaseDarcy_fc (class in proteus.SubsurfaceTransportCoefficients) (class in proteus.TwophaseDarcyCoefficients) TwophaseDarcy_fc_pp (class in proteus.SubsurfaceTransportCoefficients) twophaseDarcy_fc_pp_sd_het_matType() (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_fc_pp method) twophaseDarcy_fc_sd_het_matType() (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_fc method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcy_fc method) TwophaseDarcy_incompressible_split_pp_pressure (class in proteus.SubsurfaceTransportCoefficients) TwophaseDarcy_incompressible_split_pp_saturation (class in proteus.SubsurfaceTransportCoefficients) twophaseDarcy_incompressible_split_pp_sd_saturation_het_matType() (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_incompressible_split_pp_saturation method) TwophaseDarcy_incompressible_split_pressure (class in proteus.SubsurfaceTransportCoefficients) TwophaseDarcy_incompressible_split_saturation (class in proteus.SubsurfaceTransportCoefficients) twophaseDarcy_incompressible_split_sd_pressure_het_matType() (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_incompressible_split_pp_pressure method) (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_incompressible_split_pressure method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcy_split_pressure method) twophaseDarcy_incompressible_split_sd_saturation_het_matType() (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_incompressible_split_saturation method) (proteus.TwophaseDarcyCoefficients.TwophaseDarcy_split_saturation method) twophaseDarcy_slightCompressible_split_sd_pressure_het_matType() (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_compressible_split_pressure method) twophaseDarcy_slightCompressible_split_sd_saturation_het_matType() (proteus.SubsurfaceTransportCoefficients.TwophaseDarcy_compressible_split_saturation method) TwophaseDarcy_split_pp_pressure_base (class in proteus.SubsurfaceTransportCoefficients) TwophaseDarcy_split_pp_saturation_base (class in proteus.SubsurfaceTransportCoefficients) TwophaseDarcy_split_pressure (class in proteus.TwophaseDarcyCoefficients) TwophaseDarcy_split_pressure_base (class in proteus.SubsurfaceTransportCoefficients) TwophaseDarcy_split_saturation (class in proteus.TwophaseDarcyCoefficients) TwophaseDarcy_split_saturation_base (class in proteus.SubsurfaceTransportCoefficients) twophaseDarcy_vol_frac() (proteus.SubsurfaceTransportCoefficients.TwophaseDarcyFlow_base method) TwophaseDarcyFlow_base (class in proteus.SubsurfaceTransportCoefficients) (class in proteus.TwophaseDarcyCoefficients) TwoPhaseFlowProblem (class in proteus.TwoPhaseFlow.TwoPhaseFlowProblem) TwophaseNavierStokes_LS_SO (class in proteus.TransportCoefficients) TwophaseNavierStokes_LS_SO_2D_Evaluate() (proteus.TransportCoefficients.TwophaseNavierStokes_LS_SO method) TwophaseNavierStokes_LS_SO_3D_Evaluate() (proteus.TransportCoefficients.TwophaseNavierStokes_LS_SO method) TwophaseNavierStokes_ST_LS_SO (class in proteus.TransportCoefficients) TwophaseNavierStokes_ST_LS_SO_2D_Evaluate() (proteus.mprans.RANS2P.Coefficients method) (proteus.mprans.RANS3PF.Coefficients method) (proteus.mprans.RANS3PSed.Coefficients method) (proteus.TransportCoefficients.TwophaseNavierStokes_ST_LS_SO method) TwophaseNavierStokes_ST_LS_SO_2D_Evaluate_sd() (proteus.mprans.RANS2P.Coefficients method) (proteus.mprans.RANS3PF.Coefficients method) (proteus.mprans.RANS3PSed.Coefficients method) (proteus.TransportCoefficients.TwophaseNavierStokes_ST_LS_SO method) TwophaseNavierStokes_ST_LS_SO_3D_Evaluate() (proteus.mprans.RANS2P.Coefficients method) (proteus.mprans.RANS3PF.Coefficients method) (proteus.mprans.RANS3PSed.Coefficients method) (proteus.TransportCoefficients.TwophaseNavierStokes_ST_LS_SO method) TwophaseNavierStokes_ST_LS_SO_3D_Evaluate_sd() (proteus.mprans.RANS2P.Coefficients method) (proteus.mprans.RANS3PF.Coefficients method) (proteus.mprans.RANS3PSed.Coefficients method) (proteus.TransportCoefficients.TwophaseNavierStokes_ST_LS_SO method) TwophaseNavierStokes_VOF_SO (class in proteus.TransportCoefficients) TwophaseNavierStokes_VOF_SO_2D_Evaluate() (proteus.TransportCoefficients.TwophaseNavierStokes_VOF_SO method) TwophaseNavierStokes_VOF_SO_3D_Evaluate() (proteus.TransportCoefficients.TwophaseNavierStokes_VOF_SO method) TwophaseReynoldsAveragedNavierStokes_AlgebraicClosure (class in proteus.TransportCoefficients) TwophaseStokes_LS_FC_ASGS (class in proteus.SubgridError) TwophaseStokes_LS_SO (class in proteus.TransportCoefficients) TwophaseStokes_LS_SO_2D_Evaluate() (proteus.TransportCoefficients.TwophaseStokes_LS_SO method) TwophaseStokes_LS_SO_3D_Evaluate() (proteus.TransportCoefficients.TwophaseStokes_LS_SO method) TwophaseStokes_VOF_SO (class in proteus.TransportCoefficients) TwophaseStokes_VOF_SO_2D_Evaluate() (proteus.TransportCoefficients.TwophaseStokes_VOF_SO method) TwophaseStokes_VOF_SO_3D_Evaluate() (proteus.TransportCoefficients.TwophaseStokes_VOF_SO method) TwoStageNewton (class in proteus.NonlinearSolvers)

U

u (proteus.WaveTools.RandomNLWaves attribute) (proteus.WaveTools.TimeSeries attribute) U() (proteus.AnalyticalSolutions.PlaneBase method) u() (proteus.WaveTools.CombineWaves method) (proteus.WaveTools.DirectionalWaves method) (proteus.WaveTools.MonochromaticWaves method) (proteus.WaveTools.MultiSpectraRandomWaves method) (proteus.WaveTools.NewWave method) (proteus.WaveTools.RandomNLWavesFast method) (proteus.WaveTools.RandomWaves method) (proteus.WaveTools.SolitaryWave method) (proteus.WaveTools.SteadyCurrent method) u_advective (proteus.mprans.BoundaryConditions.BC_RANS attribute) u_diffusive (proteus.mprans.BoundaryConditions.BC_RANS attribute) u_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) u_stress (proteus.mprans.BoundaryConditions.BC_RANS attribute) uDirect() (proteus.WaveTools.TimeSeries method) Udrift() (in module proteus.WaveTools) UNDEFINED (proteus.Archiver.ArchiveFlags attribute) unique_rows() (in module proteus.SpatialTools) UnitCubeRotation (class in proteus.TransportCoefficients) unitCubeRotationEvaluate() (proteus.TransportCoefficients.UnitCubeRotation method) unitSimplex() (in module proteus.Domain) UnitSquareRotation (class in proteus.TransportCoefficients) unitSquareRotationEvaluate() (proteus.TransportCoefficients.UnitSquareRotation method) unitSquareRotationLevelSetEvaluate() (proteus.TransportCoefficients.RotatingVelocityLevelSet method) UnitSquareVortexLevelSet (class in proteus.TransportCoefficients) unitSquareVortexLevelSetEvaluate() (proteus.TransportCoefficients.UnitSquareVortexLevelSet method) unorm() (proteus.NonlinearSolvers.NonlinearSolver method) UnstructuredLimiter_base (class in proteus.TimeIntegration) uOfT() (proteus.AnalyticalSolutions.DAE_base method) (proteus.AnalyticalSolutions.NonlinearDAE method) uOfX() (proteus.AnalyticalSolutions.Buckley_Leverett_RiemannSoln method) (proteus.AnalyticalSolutions.LinearAD_SteadyState method) (proteus.AnalyticalSolutions.LinearADR_Sine method) (proteus.AnalyticalSolutions.NonlinearAD_SteadyState method) (proteus.AnalyticalSolutions.PlaneCouetteFlow_p method) (proteus.AnalyticalSolutions.PlaneCouetteFlow_u method) (proteus.AnalyticalSolutions.PlaneCouetteFlow_v method) (proteus.AnalyticalSolutions.PlanePoiseuilleFlow_p method) (proteus.AnalyticalSolutions.PlanePoiseuilleFlow_p2 method) (proteus.AnalyticalSolutions.PlanePoiseuilleFlow_u method) (proteus.AnalyticalSolutions.PlanePoiseuilleFlow_u2 method) (proteus.AnalyticalSolutions.PlanePoiseuilleFlow_v method) (proteus.AnalyticalSolutions.PlanePoiseuilleFlow_v2 method) (proteus.AnalyticalSolutions.PlanePoiseuilleFlow_w2 method) (proteus.AnalyticalSolutions.PoissonsEquation method) (proteus.AnalyticalSolutions.SteadyState method) (proteus.mprans.MoveMeshMonitor.Coefficients method) (proteus.SimTools.zeroFunction method) (proteus.SimTools.zeroVectorFunction method) uOfXT (proteus.BoundaryConditions.BoundaryCondition attribute) uOfXT() (proteus.AnalyticalSolutions.AS_base method) (proteus.AnalyticalSolutions.Buckley_Leverett_RiemannSoln method) (proteus.AnalyticalSolutions.DAE_base method) (proteus.AnalyticalSolutions.LinearAD_DiracIC method) (proteus.AnalyticalSolutions.LinearADR_Decay_DiracIC method) (proteus.AnalyticalSolutions.NonlinearADR_Decay_DiracIC method) (proteus.AnalyticalSolutions.SteadyState method) (proteus.AnalyticalSolutions.VortexDecay_p method) (proteus.AnalyticalSolutions.VortexDecay_u method) (proteus.AnalyticalSolutions.VortexDecay_v method) (proteus.SimTools.zeroFunction method) (proteus.SimTools.zeroVectorFunction method) update() (proteus.Domain.PiecewiseLinearComplexDomain method) (proteus.Domain.PlanarStraightLineGraphDomain method) update_substeps (proteus.mbd.CouplingFSI.ProtChSystem attribute) updateAfterMeshMotion() (proteus.mprans.AddedMass.LevelModel method) (proteus.mprans.CLSVOF.LevelModel method) (proteus.mprans.MCorr.LevelModel method) (proteus.mprans.MCorr3P.LevelModel method) (proteus.mprans.MoveMesh.LevelModel method) (proteus.mprans.NCLS.LevelModel method) (proteus.mprans.NCLS3P.LevelModel method) (proteus.mprans.Pres.LevelModel method) (proteus.mprans.PresInc.LevelModel method) (proteus.mprans.PresInit.LevelModel method) (proteus.mprans.RANS2P.LevelModel method) (proteus.mprans.RANS3PF.LevelModel method) (proteus.mprans.RANS3PSed.LevelModel method) (proteus.mprans.RDLS.LevelModel method) (proteus.mprans.VOF.LevelModel method) (proteus.mprans.VOF3P.LevelModel method) (proteus.mprans.VOS3P.LevelModel method) (proteus.Transport.OneLevelTransport method) updateAfterParallelPartitioning() (proteus.FemTools.DiscontinuousGalerkinDOFMap method) (proteus.FemTools.DOFMap method) (proteus.FemTools.ElementBoundaryDOFMap method) (proteus.FemTools.NodalDOFMap method) (proteus.FemTools.p0DOFMap method) (proteus.FemTools.QuadraticLagrangeCubeDOFMap method) (proteus.FemTools.QuadraticLagrangeDOFMap method) updateAllReflectingBoundaryConditions() (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) updateBeamLoad() (proteus.mprans.RANS2P_IB.Coefficients method) updateBeams() (proteus.mprans.RANS2P_IB.Coefficients method) updateConstrainedDOFs() (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) updateCoords() (proteus.mprans.beamFEM.FEMTools method) updateExteriorNumericalFluxJacobian() (proteus.NumericalFlux.Advection_Diagonal_average method) (proteus.NumericalFlux.Advection_DiagonalUpwind method) (proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_IIPG method) (proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_LDG method) (proteus.NumericalFlux.Advection_DiagonalUpwind_IIPG_exterior method) (proteus.NumericalFlux.ConstantAdvection_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.ConstantAdvection_exterior method) (proteus.NumericalFlux.Curvature_exterior method) (proteus.NumericalFlux.DarcyFC_IIPG_exterior method) (proteus.NumericalFlux.DarcyFCFF_IIPG_exterior method) (proteus.NumericalFlux.DarcyFCPP_IIPG_exterior method) (proteus.NumericalFlux.DarcySplitPressure_IIPG_exterior method) (proteus.NumericalFlux.Diffusion_IIPG_exterior method) (proteus.NumericalFlux.Diffusion_LDG method) (proteus.NumericalFlux.HamiltonJacobi_DiagonalChengShu method) (proteus.NumericalFlux.HamiltonJacobi_DiagonalLesaintRaviart method) (proteus.NumericalFlux.HamiltonJacobi_DiagonalLesaintRaviart_Diffusion_IIPG method) (proteus.NumericalFlux.HamiltonJacobi_DiagonalLesaintRaviart_Diffusion_SIPG_exterior method) (proteus.NumericalFlux.MixedDarcy_exterior method) (proteus.NumericalFlux.NavierStokes_Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.NF_base method) (proteus.NumericalFlux.Richards_IIPG_exterior method) (proteus.NumericalFlux.ShallowWater_1D method) (proteus.NumericalFlux.ShallowWater_2D method) (proteus.NumericalFlux.ShallowWaterHLL_1D method) (proteus.NumericalFlux.Stokes_Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.StokesP_Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.Stress_IIPG_exterior method) (proteus.NumericalFlux.StrongDirichlet method) updateForces() (proteus.mbd.CouplingFSI.ProtChMoorings method) updateForceTerms() (proteus.mprans.RANS3PF.LevelModel method) updateIBM() (proteus.mbd.CouplingFSI.ProtChBody method) updateInteriorNumericalFluxJacobian() (proteus.NumericalFlux.Advection_Diagonal_average method) (proteus.NumericalFlux.Advection_DiagonalUpwind method) (proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_IIPG method) (proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_LDG method) (proteus.NumericalFlux.Advection_DiagonalUpwind_exterior method) (proteus.NumericalFlux.Advection_DiagonalUpwind_IIPG_exterior method) (proteus.NumericalFlux.ConstantAdvection_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.ConstantAdvection_exterior method) (proteus.NumericalFlux.Curvature_exterior method) (proteus.NumericalFlux.DarcyFC_IIPG_exterior method) (proteus.NumericalFlux.DarcyFCFF_IIPG_exterior method) (proteus.NumericalFlux.DarcyFCPP_IIPG_exterior method) (proteus.NumericalFlux.DarcySplitPressure_IIPG_exterior method) (proteus.NumericalFlux.Diffusion_IIPG_exterior method) (proteus.NumericalFlux.Diffusion_LDG method) (proteus.NumericalFlux.HamiltonJacobi_DiagonalChengShu method) (proteus.NumericalFlux.HamiltonJacobi_DiagonalLesaintRaviart method) (proteus.NumericalFlux.HamiltonJacobi_DiagonalLesaintRaviart_Diffusion_IIPG method) (proteus.NumericalFlux.MixedDarcy_exterior method) (proteus.NumericalFlux.NavierStokes_Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.NF_base method) (proteus.NumericalFlux.NoFlux method) (proteus.NumericalFlux.ShallowWater_1D method) (proteus.NumericalFlux.ShallowWater_2D method) (proteus.NumericalFlux.ShallowWaterHLL_1D method) (proteus.NumericalFlux.Stokes_Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.StokesP_Advection_DiagonalUpwind_Diffusion_IIPG_exterior method) (proteus.NumericalFlux.Stress_IIPG_exterior method)

updateInterpolationPoints() (proteus.FemTools.ParametricFiniteElementSpace method) updateInvScaledAp() (proteus.LinearSolvers.SchurOperatorConstructor method) updateJacobian() (proteus.NonlinearSolvers.MultilevelNonlinearSolver method) updateLoads() (proteus.mprans.beamFEM.FEMTools method) updateLocal2Global() (proteus.Transport.OneLevelTransport method) updateMassOperator() (proteus.LinearSolvers.OperatorConstructor_oneLevel method) updateMaterialParameters() (proteus.mprans.RANS3PF.LevelModel method) updateNp_rho() (proteus.LinearSolvers.SchurOperatorConstructor method) updatePartialReflectingBoundaryConditions() (proteus.mprans.GN_SW2DCV.LevelModel method) (proteus.mprans.SW2DCV.LevelModel method) updateQ() (proteus.LinearSolvers.SchurOperatorConstructor method) updateQs() (proteus.mprans.beamFEM.FEMTools method) updateRT0velocityWithAveragedPotentialP1nc() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_P1nc_RT0 method) updateRT0velocityWithAveragedPotentialP1nc_sd() (proteus.PostProcessingTools.VelocityPostProcessor_Original method) (proteus.PostProcessingTools.VPP_P1nc_RT0 method) updateShockCapturingHistory() (proteus.ADR.ShockCapturing method) (proteus.mprans.Dissipation.ShockCapturing method) (proteus.mprans.Kappa.ShockCapturing method) (proteus.mprans.NCLS.ShockCapturing method) (proteus.mprans.NCLS3P.ShockCapturing method) (proteus.mprans.RANS2P.ShockCapturing method) (proteus.mprans.RANS3PF.ShockCapturing method) (proteus.mprans.RANS3PSed.ShockCapturing method) (proteus.mprans.RDLS.ShockCapturing method) (proteus.mprans.SW2D.ShockCapturing method) (proteus.mprans.VOF.ShockCapturing method) (proteus.mprans.VOF3P.ShockCapturing method) (proteus.mprans.VOS3P.ShockCapturing method) (proteus.ShockCapturing.NavierStokes_SC method) (proteus.ShockCapturing.NavierStokes_SC_opt method) (proteus.ShockCapturing.ResGradDelayLag_SC method) (proteus.ShockCapturing.ResGradFFDarcyDelayLag_SC method) (proteus.ShockCapturing.ResGradQuadDelayLag_SC method) (proteus.ShockCapturing.ShockCapturing_base method) updateSolution() (proteus.mprans.beamFEM.FEMTools method) updateStage() (proteus.mprans.GN_SW2DCV.RKEV method) (proteus.mprans.NCLS.RKEV method) (proteus.mprans.SW2DCV.RKEV method) (proteus.mprans.VOF.RKEV method) (proteus.mprans.VOF3P.RKEV method) (proteus.mprans.VOS3P.RKEV method) (proteus.TimeIntegration.ExplicitRK_base method) (proteus.TimeIntegration.FLCBDF method) (proteus.TimeIntegration.ForwardEuler_A method) (proteus.TimeIntegration.ForwardEuler_H method) (proteus.TimeIntegration.LinearSSPRKPIintegration method) (proteus.TimeIntegration.SSPRKPIintegration method) (proteus.TimeIntegration.TI_base method) updateSubgridErrorHistory() (proteus.ADR.SubgridError method) (proteus.mprans.Dissipation.SubgridError method) (proteus.mprans.Kappa.SubgridError method) (proteus.mprans.NCLS.SubgridError method) (proteus.mprans.NCLS3P.SubgridError method) (proteus.mprans.RANS2P.SubgridError method) (proteus.mprans.RANS3PF.SubgridError method) (proteus.mprans.RANS3PSed.SubgridError method) (proteus.mprans.RDLS.SubgridError method) (proteus.mprans.SW2D.SubgridError method) (proteus.mprans.VOF.SubgridError method) (proteus.mprans.VOF3P.SubgridError method) (proteus.mprans.VOS3P.SubgridError method) (proteus.SubgridError.Advection_ASGS method) (proteus.SubgridError.AdvectionDiffusionReaction_ASGS method) (proteus.SubgridError.AdvectionDiffusionReactionHaukeSangalliInterpolant_ASGS method) (proteus.SubgridError.AdvectionDiffusionReactionHaukeSangalliInterpolantWithTransientSubScales_ASGS method) (proteus.SubgridError.AdvectionDiffusionReactionTransientSubscales_ASGS method) (proteus.SubgridError.AdvectionLag_ASGS method) (proteus.SubgridError.DarcyFC_ASGS method) (proteus.SubgridError.FFDarcyFC_ASGS method) (proteus.SubgridError.HamiltonJacobi_ASGS method) (proteus.SubgridError.HamiltonJacobi_ASGS_opt method) (proteus.SubgridError.HamiltonJacobiDiffusionReaction_ASGS method) (proteus.SubgridError.NavierStokesASGS_velocity_pressure method) (proteus.SubgridError.NavierStokesASGS_velocity_pressure_opt method) (proteus.SubgridError.NavierStokesASGS_velocity_pressure_optV2 method) (proteus.SubgridError.NavierStokesTransientSubScalesASGS_velocity_pressure method) (proteus.SubgridError.SGE_base method) (proteus.SubgridError.StokesASGS_velocity method) (proteus.SubgridError.StokesStabilization_1 method) (proteus.SubgridError.TwophaseStokes_LS_FC_ASGS method) updateSubstep() (proteus.mprans.RDLS.PsiTC method) (proteus.StepControl.Osher_controller method) (proteus.StepControl.Osher_PsiTC_controller method) (proteus.StepControl.Osher_PsiTC_controller2 method) (proteus.StepControl.PsiTCtte_controller method) (proteus.StepControl.SC_base method) updateTimeHistory() (proteus.mprans.GN_SW2DCV.RKEV method) (proteus.mprans.NCLS.RKEV method) (proteus.mprans.SW2DCV.RKEV method) (proteus.mprans.VOF.RKEV method) (proteus.mprans.VOF3P.RKEV method) (proteus.mprans.VOS3P.RKEV method) (proteus.SplitOperator.SO_base method) (proteus.StepControl.GustafssonFullNewton_dt_controller method) (proteus.StepControl.HeuristicNL_dt_controller method) (proteus.StepControl.Min_dt_cfl_controller method) (proteus.StepControl.SC_base method) (proteus.TimeIntegration.BackwardEuler method) (proteus.TimeIntegration.BackwardEuler_cfl method) (proteus.TimeIntegration.CentralDifference_2ndD method) (proteus.TimeIntegration.ExplicitRK_base method) (proteus.TimeIntegration.FLCBDF method) (proteus.TimeIntegration.ForwardEuler method) (proteus.TimeIntegration.ForwardEuler_A method) (proteus.TimeIntegration.ForwardEuler_H method) (proteus.TimeIntegration.OuterTheta method) (proteus.TimeIntegration.PsiTCtte method) (proteus.TimeIntegration.PsiTCtte_new method) (proteus.TimeIntegration.TI_base method) (proteus.TimeIntegration.VBDF method) (proteus.Transport.OneLevelTransport method) updateToMovingDomain() (proteus.mprans.CLSVOF.Coefficients method) (proteus.mprans.Dissipation.Coefficients method) (proteus.mprans.GN_SW2DCV.Coefficients method) (proteus.mprans.Kappa.Coefficients method) (proteus.mprans.NCLS.Coefficients method) (proteus.mprans.NCLS3P.Coefficients method) (proteus.mprans.RANS2P.Coefficients method) (proteus.mprans.RANS3PF.Coefficients method) (proteus.mprans.RANS3PSed.Coefficients method) (proteus.mprans.RDLS.Coefficients method) (proteus.mprans.SW2D.Coefficients method) (proteus.mprans.SW2DCV.Coefficients method) (proteus.mprans.VOF.Coefficients method) (proteus.mprans.VOF3P.Coefficients method) (proteus.mprans.VOS3P.Coefficients method) (proteus.TransportCoefficients.NCLevelSetCoefficients method) (proteus.TransportCoefficients.RedistanceLevelSet method) (proteus.TransportCoefficients.TC_base method) (proteus.TransportCoefficients.TwophaseNavierStokes_ST_LS_SO method) (proteus.TransportCoefficients.VOFCoefficients method) updateTPAdvectionOperator() (proteus.LinearSolvers.OperatorConstructor_oneLevel method) (proteus.LinearSolvers.OperatorConstructor_rans2p method) updateTPInvScaledLaplaceOperator() (proteus.LinearSolvers.OperatorConstructor_rans2p method) updateTPInvScaleLaplaceOperator() (proteus.LinearSolvers.OperatorConstructor_oneLevel method) updateTwoPhaseInvScaledMassOperator() (proteus.LinearSolvers.OperatorConstructor_oneLevel method) (proteus.LinearSolvers.OperatorConstructor_rans2p method) updateTwoPhaseInvScaledQp_visc() (proteus.LinearSolvers.SchurOperatorConstructor method) updateTwoPhaseMassOperator_rho() (proteus.LinearSolvers.OperatorConstructor_oneLevel method) (proteus.LinearSolvers.OperatorConstructor_rans2p method) updateTwoPhaseQp_rho() (proteus.LinearSolvers.SchurOperatorConstructor method) updateVelocityFieldAsFunction() (proteus.mprans.CLSVOF.LevelModel method) (proteus.mprans.NCLS.LevelModel method) (proteus.mprans.NCLS3P.LevelModel method) (proteus.mprans.VOF.LevelModel method) (proteus.mprans.VOF3P.LevelModel method) (proteus.mprans.VOS3P.LevelModel method) updateWeights() (proteus.PostProcessingTools.VPP_PWL_BDM_OPT method) us_advective (proteus.mprans.BoundaryConditions.BC_RANS attribute) us_diffusive (proteus.mprans.BoundaryConditions.BC_RANS attribute) us_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) useC (in module proteus.Norms) (proteus.FemTools.FiniteElementFunction attribute) useDefaultModels() (proteus.TwoPhaseFlow.TwoPhaseFlowProblem.SystemPhysics method) useIBM (proteus.mbd.CouplingFSI.ProtChBody attribute) useStrongDirichletConstraints (proteus.NumericalFlux.ConstantAdvection_exterior attribute) (proteus.NumericalFlux.NF_base attribute) useWeakDirichletConditions (proteus.NumericalFlux.NF_base attribute) (proteus.NumericalFlux.StrongDirichlet attribute) uWindow() (proteus.WaveTools.TimeSeries method)

V

v_advective (proteus.mprans.BoundaryConditions.BC_RANS attribute) V_base (class in proteus.Viewers) v_diffusive (proteus.mprans.BoundaryConditions.BC_RANS attribute) v_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) v_stress (proteus.mprans.BoundaryConditions.BC_RANS attribute) VariablySaturatedGroundwaterEnergyTransportCoefficients (class in proteus.SubsurfaceTransportCoefficients) variablySaturatedGroundwaterEnergyTransportCoefficientsEvaluate_hetMat() (proteus.SubsurfaceTransportCoefficients.VariablySaturatedGroundwaterEnergyTransportCoefficients method) variablySaturatedGroundwaterTransportCoefficientsEvaluate_hetMat() (proteus.SubsurfaceTransportCoefficients.MultiphaseGroundwaterTransportCoefficients method) VBDF (class in proteus.TimeIntegration) vDir (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) Vec() (in module proteus.LinearAlgebraTools) vel_mode() (in module proteus.WaveTools) velocity (proteus.mbd.CouplingFSI.ProtChBody attribute) velocity_last (proteus.mbd.CouplingFSI.ProtChBody attribute) VelocityAverage (class in proteus.AuxiliaryVariables) VelocityNormOverRegion (class in proteus.AuxiliaryVariables) VelocityPostProcessingAlgorithmBase (class in proteus.PostProcessingTools) VelocityPostProcessingChooser() (in module proteus.PostProcessingTools) VelocityPostProcessor_Original (class in proteus.PostProcessingTools) verboseOn_callback() (in module proteus.Profiling) vert_axis (proteus.mprans.BoundaryConditions.RelaxationZone attribute) VGM_to_BCB_Johns() (in module proteus.TransportCoefficients) VGM_to_BCB_MorelSeytoux() (in module proteus.TransportCoefficients) VGM_to_BCB_Simple() (in module proteus.TransportCoefficients) viewerOn() (in module proteus.Viewers) viewGlobalScalarPointData() (proteus.Viewers.MatlabWriter method) viewGlobalVectorPointData() (proteus.Viewers.MatlabWriter method) viewJacobian() (proteus.Transport.MultilevelTransport method) viewLocalScalarPointData() (proteus.Viewers.MatlabWriter method) viewMeshGnuplot() (proteus.MeshTools.Mesh method) viewMeshGnuplotPipe() (proteus.MeshTools.Mesh method) viewMeshGnuplotPipePar() (proteus.MeshTools.Mesh method) viewMeshMatlab() (proteus.MeshTools.Mesh method) viewScalar_CrouzeixRaviartP1() (proteus.Viewers.MatlabWriter method) viewScalar_DGP0() (proteus.Viewers.MatlabWriter method) viewScalar_LagrangeC0P1() (proteus.Viewers.MatlabWriter method) viewScalar_LagrangeC0P2() (proteus.Viewers.MatlabWriter method) viewScalar_LagrangeDGP1() (proteus.Viewers.MatlabWriter method) viewScalar_LagrangeDGP2() (proteus.Viewers.MatlabWriter method) viewScalar_MonomialDGPK() (proteus.Viewers.MatlabWriter method) viewScalarAnalyticalFunction() (proteus.Viewers.MatlabWriter method) viewScalarPointData() (proteus.Viewers.MatlabWriter method) viewSolution() (proteus.NumericalSolution.NS_base method) (proteus.Transport.OneLevelTransport method) viewSolutionVTK() (proteus.Transport.OneLevelTransport method) viewTetrahedraMatlab() (proteus.MeshTools.Mesh method) viewVector_LagrangeC0P1() (proteus.Viewers.MatlabWriter method) viewVector_LagrangeC0P2() (proteus.Viewers.MatlabWriter method)

viewVectorAnalyticalFunction() (proteus.Viewers.MatlabWriter method) viewVectorPointData() (proteus.Viewers.MatlabWriter method) ViscousBurgersEqn (class in proteus.TransportCoefficients) visualize_zslice() (in module proteus.deim_utils) vof_advective (proteus.mprans.BoundaryConditions.BC_RANS attribute) vof_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) VOFCoefficients (class in proteus.TransportCoefficients) VOFCoefficientsEvaluate() (proteus.mprans.VOF.Coefficients method) (proteus.mprans.VOF3P.Coefficients method) (proteus.mprans.VOS3P.Coefficients method) (proteus.TransportCoefficients.VOFCoefficients method) VolumeAveragedNavierStokesFullDevStress (class in proteus.TransportCoefficients) VolumeAveragedNavierStokesFullDevStress_2D_Evaluate() (proteus.TransportCoefficients.VolumeAveragedNavierStokesFullDevStress method) VolumeAveragedNavierStokesFullDevStress_3D_Evaluate() (proteus.TransportCoefficients.VolumeAveragedNavierStokesFullDevStress method) VolumeAveragedTwophaseNavierStokes (class in proteus.TransportCoefficients) VolumeAveragedTwophaseNavierStokes_ST_LS_SO_2D_Evaluate() (proteus.TransportCoefficients.VolumeAveragedTwophaseNavierStokes method) VolumeAveragedTwophaseNavierStokes_ST_LS_SO_2D_Evaluate_sd() (proteus.TransportCoefficients.VolumeAveragedTwophaseNavierStokes method) VolumeAveragedTwophaseNavierStokes_ST_LS_SO_3D_Evaluate() (proteus.TransportCoefficients.VolumeAveragedTwophaseNavierStokes method) VolumeAveragedTwophaseNavierStokes_ST_LS_SO_3D_Evaluate_sd() (proteus.TransportCoefficients.VolumeAveragedTwophaseNavierStokes method) VolumeAveragedVOFCoefficients (class in proteus.TransportCoefficients) VolumeAveragedVOFCoefficientsEvaluate() (proteus.mprans.VOF.Coefficients method) (proteus.mprans.VOF3P.Coefficients method) (proteus.mprans.VOS3P.Coefficients method) (proteus.TransportCoefficients.VolumeAveragedVOFCoefficients method) VortexDecay_p (class in proteus.AnalyticalSolutions) VortexDecay_u (class in proteus.AnalyticalSolutions) VortexDecay_v (class in proteus.AnalyticalSolutions) vos_advective (proteus.mprans.BoundaryConditions.BC_RANS attribute) vos_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) VPP_DG_BDM (class in proteus.PostProcessingTools) VPP_DG_RT0 (class in proteus.PostProcessingTools) VPP_LOW_K_IB_PWL_RT0 (class in proteus.PostProcessingTools) VPP_P1nc_RT0 (class in proteus.PostProcessingTools) VPP_POINT_EVAL (class in proteus.PostProcessingTools) VPP_POINT_EVAL_GWVD (class in proteus.PostProcessingTools) VPP_PWC_RT0 (class in proteus.PostProcessingTools) VPP_PWL_BDM (class in proteus.PostProcessingTools) VPP_PWL_BDM2 (class in proteus.PostProcessingTools) VPP_PWL_BDM_OPT (class in proteus.PostProcessingTools) VPP_PWL_RT0 (class in proteus.PostProcessingTools) VPP_PWL_RT0_OPT (class in proteus.PostProcessingTools) VPP_PWL_RT1 (class in proteus.PostProcessingTools) VPP_SUN_GS_RT0 (class in proteus.PostProcessingTools) VPP_SUN_RT0 (class in proteus.PostProcessingTools) vpp_types (proteus.PostProcessingTools.AggregateVelocityPostProcessor attribute) vs_advective (proteus.mprans.BoundaryConditions.BC_RANS attribute) vs_diffusive (proteus.mprans.BoundaryConditions.BC_RANS attribute) vs_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) vtkOn() (in module proteus.Viewers)

W

w_advective (proteus.mprans.BoundaryConditions.BC_RANS attribute) w_diffusive (proteus.mprans.BoundaryConditions.BC_RANS attribute) w_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) w_stress (proteus.mprans.BoundaryConditions.BC_RANS attribute) WallFunctions (class in proteus.mprans.BoundaryConditions) waveDir (proteus.WaveTools.NewWave attribute) (proteus.WaveTools.RandomWaves attribute) wavelength (proteus.WaveTools.MonochromaticWaves attribute) (proteus.WaveTools.RandomWaves attribute) (proteus.WaveTools.TimeSeries attribute) wDot() (in module proteus.LinearAlgebraTools) weakDirichletConditions (in module proteus.default_p) WeightedNorm (class in proteus.LinearAlgebraTools) width_2D (proteus.mbd.CouplingFSI.ProtChBody attribute) windOut() (proteus.WaveTools.TimeSeries method) windowNumber() (proteus.Viewers.V_base method) wl1Norm() (in module proteus.LinearAlgebraTools) wl2Norm() (in module proteus.LinearAlgebraTools) wlInfNorm() (in module proteus.LinearAlgebraTools) write2dmFiles() (in module proteus.cmeshTools) write3dmFiles() (in module proteus.cmeshTools) write_ebq_geo_Ensight() (proteus.Transport.OneLevelTransport method) write_ebq_velocity_Ensight() (proteus.Transport.OneLevelTransport method) writeAsymptote() (proteus.Domain.D_base method) (proteus.Domain.PiecewiseLinearComplexDomain method) (proteus.Domain.PlanarStraightLineGraphDomain method) (proteus.Domain.RectangularDomain method) (proteus.Domain.TriangulatedSurfaceDomain method) (proteus.MeshTools.TriangularMesh method) writeBoundaryFacesADH() (proteus.MeshTools.TetrahedralMesh method) writeBoundaryMeshADH() (proteus.MeshTools.Mesh2DM method) (proteus.MeshTools.Mesh3DM method) writeBoundaryMeshEnsight() (proteus.MeshTools.Mesh3DM method) writeBoundaryNodesADH() (proteus.MeshTools.TetrahedralMesh method) writeE2VectorFunctionEnsight() (proteus.FemTools.C0_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineQuadraticOnSimplexWithNodalBasis method) writeE2VectorFunctionHeaderEnsight() (proteus.FemTools.C0_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineQuadraticOnSimplexWithNodalBasis method) writeE3VectorFunctionEnsight() (proteus.FemTools.C0_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineQuadraticOnSimplexWithNodalBasis method) writeE3VectorFunctionHeaderEnsight() (proteus.FemTools.C0_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineQuadraticOnSimplexWithNodalBasis method) writeEdgesGnuplot() (proteus.MeshTools.Mesh method) writeEdgesGnuplot2() (proteus.MeshTools.Mesh method) writeEdgesMatlab() (proteus.MeshTools.Mesh method) writeEnsightMeshForElementBoundaryQuantities() (proteus.SimTools.SimulationProcessor method) writeEnsightMeshForElementQuantities() (proteus.SimTools.SimulationProcessor method) writeEtaSeries() (proteus.WaveTools.NewWave method) (proteus.WaveTools.RandomNLWaves method) (proteus.WaveTools.RandomWaves method) writeFunctionEnsight() (proteus.FemTools.C0_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1P0BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffineP0_OnSimplexWithMonomialBasis method) (proteus.FemTools.DG_AffinePolynomialsOnSimplexWithMonomialBasis method) (proteus.FemTools.DG_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_Constants method) (proteus.FemTools.FiniteElementFunction method) (proteus.FemTools.NC_AffineLinearOnSimplexWithNodalBasis method) writeFunctionGnuplot() (proteus.FemTools.C0_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1P0BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffinePolynomialsOnSimplexWithMonomialBasis method) (proteus.FemTools.DG_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_Constants method) (proteus.FemTools.FiniteElementFunction method) (proteus.FemTools.NC_AffineLinearOnSimplexWithNodalBasis method) writeFunctionHeaderEnsight() (proteus.FemTools.C0_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1P0BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffineP0_OnSimplexWithMonomialBasis method) (proteus.FemTools.DG_AffinePolynomialsOnSimplexWithMonomialBasis method) (proteus.FemTools.DG_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_Constants method) (proteus.FemTools.NC_AffineLinearOnSimplexWithNodalBasis method) writeFunctionMatlab() (proteus.FemTools.C0_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1P0BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffinePolynomialsOnSimplexWithMonomialBasis method) (proteus.FemTools.DG_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_Constants method) (proteus.FemTools.FiniteElementFunction method) (proteus.FemTools.NC_AffineLinearOnSimplexWithNodalBasis method) writeFunctionXdmf() (proteus.FemTools.C0_AffineBernsteinOnCube method) (proteus.FemTools.C0_AffineLagrangeOnCubeWithNodalBasis method) (proteus.FemTools.C0_AffineLinearOnCubeWithNodalBasis method) (proteus.FemTools.C0_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1P0BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffineP0_OnSimplexWithMonomialBasis method) (proteus.FemTools.DG_AffinePolynomialsOnSimplexWithMonomialBasis method) (proteus.FemTools.DG_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_Constants method) (proteus.FemTools.NC_AffineLinearOnSimplexWithNodalBasis method) writeFunctionXdmf_C0P2Lagrange() (proteus.Archiver.XdmfWriter method) writeFunctionXdmf_CrouzeixRaviartP1() (proteus.Archiver.XdmfWriter method) writeFunctionXdmf_DGP0() (proteus.Archiver.XdmfWriter method) writeFunctionXdmf_DGP1Lagrange() (proteus.Archiver.XdmfWriter method) writeFunctionXdmf_DGP2Lagrange() (proteus.Archiver.XdmfWriter method) writeFunctionXdmf_MonomialDGPK() (proteus.Archiver.XdmfWriter method) writeFunctionXdmf_P1Bubble() (proteus.Archiver.XdmfWriter method) writeGeo() (proteus.Domain.D_base method) writeHexMesh() (in module proteus.MeshTools) writeMeshADH() (proteus.MeshTools.EdgeMesh method) (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method)

writeMeshEnsight() (proteus.FemTools.C0_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1P0BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffineP0_OnSimplexWithMonomialBasis method) (proteus.FemTools.DG_AffinePolynomialsOnSimplexWithMonomialBasis method) (proteus.FemTools.DG_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_Constants method) (proteus.FemTools.NC_AffineLinearOnSimplexWithNodalBasis method) (proteus.MeshTools.EdgeMesh method) (proteus.MeshTools.Mesh2DM method) (proteus.MeshTools.Mesh3DM method) (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method) writeMeshXdmf() (proteus.FemTools.C0_AffineBernsteinOnCube method) (proteus.FemTools.C0_AffineLagrangeOnCubeWithNodalBasis method) (proteus.FemTools.C0_AffineLinearOnCubeWithNodalBasis method) (proteus.FemTools.C0_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1P0BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffineP0_OnSimplexWithMonomialBasis method) (proteus.FemTools.DG_AffinePolynomialsOnSimplexWithMonomialBasis method) (proteus.FemTools.DG_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_Constants method) (proteus.FemTools.NC_AffineLinearOnSimplexWithNodalBasis method) (proteus.MeshTools.EdgeMesh method) (proteus.MeshTools.HexahedralMesh method) (proteus.MeshTools.Mesh method) (proteus.MeshTools.Mesh2DM method) (proteus.MeshTools.Mesh3DM method) (proteus.MeshTools.QuadrilateralMesh method) (proteus.MeshTools.TetrahedralMesh method) (proteus.MeshTools.TriangularMesh method) writeMeshXdmf_C0P2Lagrange() (proteus.Archiver.XdmfWriter method) writeMeshXdmf_C0Q2Lagrange() (proteus.Archiver.XdmfWriter method) writeMeshXdmf_CrouzeixRaviartP1() (proteus.Archiver.XdmfWriter method) writeMeshXdmf_DGP0() (proteus.Archiver.XdmfWriter method) writeMeshXdmf_DGP1Lagrange() (proteus.Archiver.XdmfWriter method) writeMeshXdmf_DGP2Lagrange() (proteus.Archiver.XdmfWriter method) writeMeshXdmf_elementBoundaryQuadrature() (proteus.Archiver.XdmfWriter method) writeMeshXdmf_elementQuadrature() (proteus.Archiver.XdmfWriter method) writeMeshXdmf_exteriorElementBoundaryQuadrature() (proteus.Archiver.XdmfWriter method) writeMeshXdmf_LowestOrderMixed() (proteus.Archiver.XdmfWriter method) writeMeshXdmf_MonomialDGPK() (proteus.Archiver.XdmfWriter method) writeMeshXdmf_P1Bubble() (proteus.Archiver.XdmfWriter method) writeMeshXdmf_particles() (proteus.Archiver.XdmfWriter method) writeMeshXdmf_quadraturePoints() (proteus.Archiver.XdmfWriter method) writePLY() (proteus.Domain.PiecewiseLinearComplexDomain method) (proteus.Domain.PlanarStraightLineGraphDomain method) writePoly() (proteus.Domain.PiecewiseLinearComplexDomain method) (proteus.Domain.PlanarStraightLineGraphDomain method) (proteus.Domain.PUMIDomain method) (proteus.Domain.RectangularDomain method) (proteus.Domain.TriangulatedSurfaceDomain method) writeProgress() (proteus.TimeIntegration.ForwardIntegrator method) (proteus.TimeIntegration.SignedDistanceIntegrator method) (proteus.TimeIntegration.SteadyStateIntegrator method) writePT123elementPorosity() (proteus.AuxiliaryVariables.PT123velocityGenerator method) writePT123elementVelocity() (proteus.AuxiliaryVariables.PT123velocityGenerator method) writePT123inputMesh() (proteus.AuxiliaryVariables.PT123velocityGenerator method) writePT123MixedVelocityAsElementVelocity() (proteus.AuxiliaryVariables.PT123velocityGenerator method) writePT123nodalPorosity() (proteus.AuxiliaryVariables.PT123velocityGenerator method) writePT123nodalVelocity() (proteus.AuxiliaryVariables.PT123velocityGenerator method) writeScalarElementFunctionHeaderEnsight() (proteus.SimTools.SimulationProcessor method) writeScalarXdmf() (proteus.AuxiliaryVariables.AV_base method) writeScalarXdmf_elementBoundaryQuadrature() (proteus.Archiver.XdmfWriter method) writeScalarXdmf_elementQuadrature() (proteus.Archiver.XdmfWriter method) writeScalarXdmf_exteriorElementBoundaryQuadrature() (proteus.Archiver.XdmfWriter method) writeScalarXdmf_particles() (proteus.Archiver.XdmfWriter method) writeScalarXdmf_quadrature() (proteus.Archiver.XdmfWriter method) writeSolverStatisticsForStep() (proteus.StepControl.SC_base method) writeTensorXdmf_elementBoundaryQuadrature() (proteus.Archiver.XdmfWriter method) writeTensorXdmf_elementQuadrature() (proteus.Archiver.XdmfWriter method) writeTensorXdmf_exteriorElementBoundaryQuadrature() (proteus.Archiver.XdmfWriter method) writeTensorXdmf_quadrature() (proteus.Archiver.XdmfWriter method) writeTetgenFiles() (in module proteus.cmeshTools) (proteus.MeshTools.TetrahedralMesh method) writeTriangleFiles() (in module proteus.cmeshTools) (proteus.MeshTools.TriangularMesh method) writeVectorElementFunctionHeaderEnsight() (proteus.SimTools.SimulationProcessor method) writeVectorFunctionXdmf() (proteus.FemTools.C0_AffineBernsteinOnCube method) (proteus.FemTools.C0_AffineLagrangeOnCubeWithNodalBasis method) (proteus.FemTools.C0_AffineLinearOnCubeWithNodalBasis method) (proteus.FemTools.C0_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineP1P0BubbleOnSimplexWithNodalBasis method) (proteus.FemTools.C0_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffineLinearOnSimplexWithNodalBasis method) (proteus.FemTools.DG_AffineP0_OnSimplexWithMonomialBasis method) (proteus.FemTools.DG_AffinePolynomialsOnSimplexWithMonomialBasis method) (proteus.FemTools.DG_AffineQuadraticOnSimplexWithNodalBasis method) (proteus.FemTools.DG_Constants method) (proteus.FemTools.NC_AffineLinearOnSimplexWithNodalBasis method) writeVectorFunctionXdmf_CrouzeixRaviartP1() (proteus.Archiver.XdmfWriter method) writeVectorFunctionXdmf_DGP0() (proteus.Archiver.XdmfWriter method) writeVectorFunctionXdmf_LowestOrderMixed() (proteus.Archiver.XdmfWriter method) writeVectorFunctionXdmf_MonomialDGPK() (proteus.Archiver.XdmfWriter method) writeVectorFunctionXdmf_nodal() (proteus.Archiver.XdmfWriter method) writeVectorFunctionXdmf_P1Bubble() (proteus.Archiver.XdmfWriter method) writeVectorXdmf_elementBoundaryQuadrature() (proteus.Archiver.XdmfWriter method) writeVectorXdmf_elementQuadrature() (proteus.Archiver.XdmfWriter method) writeVectorXdmf_exteriorElementBoundaryQuadrature() (proteus.Archiver.XdmfWriter method) writeVectorXdmf_particles() (proteus.Archiver.XdmfWriter method) writeVectorXdmf_quadrature() (proteus.Archiver.XdmfWriter method) writeXdmf() (proteus.Domain.D_base method) (proteus.Domain.PiecewiseLinearComplexDomain method) (proteus.Domain.PlanarStraightLineGraphDomain method) (proteus.Domain.RectangularDomain method) ws_advective (proteus.mprans.BoundaryConditions.BC_RANS attribute) ws_diffusive (proteus.mprans.BoundaryConditions.BC_RANS attribute) ws_dirichlet (proteus.mprans.BoundaryConditions.BC_RANS attribute) wtError() (proteus.WaveTools.RandomNLWaves method)

X

X() (proteus.AnalyticalSolutions.PlaneBase method) x0 (in module proteus.default_p) XdmfArchive (in module proteus.Archiver)

XdmfWriter (class in proteus.Archiver) xUnitVector (proteus.MeshTools.Edge attribute) (proteus.MeshTools.Node attribute)

Y

yUnitVector (proteus.MeshTools.Edge attribute) (proteus.MeshTools.Node attribute)

Z

Z() (proteus.AnalyticalSolutions.PlaneBase method) zeroCrossing() (in module proteus.AnalysisTools) zeroFunction (class in proteus.SimTools) zeroVectorFunction (class in proteus.SimTools)

zone_type (proteus.mprans.BoundaryConditions.RelaxationZone attribute) zones (proteus.mprans.BoundaryConditions.RelaxationZoneWaveGenerator attribute) zUnitVector (proteus.MeshTools.Edge attribute) (proteus.MeshTools.Node attribute) (proteus.MeshTools.Triangle attribute)